miRNA display CGI


Results 1 - 10 of 10 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17994 5' -52.9 NC_004665.1 + 15999 0.66 0.727396
Target:  5'- uAUGGCCAUAGGGGaccguuagguuaucUCuGugGCCuuuucguuuaauggAGGGCc -3'
miRNA:   3'- -UACUGGUAUCCCU--------------AG-CugUGG--------------UCUCG- -5'
17994 5' -52.9 NC_004665.1 + 26694 0.66 0.722922
Target:  5'- -cGACCAUcGGuucGGUCuAC-CCAGAGCa -3'
miRNA:   3'- uaCUGGUAuCC---CUAGcUGuGGUCUCG- -5'
17994 5' -52.9 NC_004665.1 + 30314 0.66 0.711668
Target:  5'- -aGAUCGccGGGAUgGugACCAauGGGCa -3'
miRNA:   3'- uaCUGGUauCCCUAgCugUGGU--CUCG- -5'
17994 5' -52.9 NC_004665.1 + 1301 0.66 0.700328
Target:  5'- -aGGCCAUcacGGauuGGAUCGAaCACCAGAc- -3'
miRNA:   3'- uaCUGGUA---UC---CCUAGCU-GUGGUCUcg -5'
17994 5' -52.9 NC_004665.1 + 14854 0.67 0.673988
Target:  5'- cGUGACCcucUGGGGAcucaaGAaggcugcccgugcgUACCAGAGCg -3'
miRNA:   3'- -UACUGGu--AUCCCUag---CU--------------GUGGUCUCG- -5'
17994 5' -52.9 NC_004665.1 + 4397 0.67 0.642781
Target:  5'- cGUGGCCuucucuGGGGUCGGCGUCAaGGCc -3'
miRNA:   3'- -UACUGGuau---CCCUAGCUGUGGUcUCG- -5'
17994 5' -52.9 NC_004665.1 + 35940 0.7 0.482143
Target:  5'- -cGGCCcgAGGGGUCGAuCACaaggauuuucuGAGCg -3'
miRNA:   3'- uaCUGGuaUCCCUAGCU-GUGgu---------CUCG- -5'
17994 5' -52.9 NC_004665.1 + 16045 0.73 0.321301
Target:  5'- uAUGGCCAUAGugaGGGUUuuuaGGCAgCAGAGCg -3'
miRNA:   3'- -UACUGGUAUC---CCUAG----CUGUgGUCUCG- -5'
17994 5' -52.9 NC_004665.1 + 30381 0.75 0.233213
Target:  5'- gAUGACCAcuUGGGGAaccaaGAUcaaACCAGAGCa -3'
miRNA:   3'- -UACUGGU--AUCCCUag---CUG---UGGUCUCG- -5'
17994 5' -52.9 NC_004665.1 + 490 1.09 0.000913
Target:  5'- gAUGACCAUAGGGAUCGACACCAGAGCc -3'
miRNA:   3'- -UACUGGUAUCCCUAGCUGUGGUCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.