miRNA display CGI


Results 1 - 20 of 23 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17996 5' -51.5 NC_004665.1 + 31315 0.66 0.838643
Target:  5'- -gGACCgagguaCGCAC-AGCAGCAgCCG-GGu -3'
miRNA:   3'- agUUGGa-----GCGUGuUCGUUGU-GGCaCC- -5'
17996 5' -51.5 NC_004665.1 + 17467 0.66 0.838643
Target:  5'- aCGACUcCGUgGCAGGCAguggGCGCuCGUGGu -3'
miRNA:   3'- aGUUGGaGCG-UGUUCGU----UGUG-GCACC- -5'
17996 5' -51.5 NC_004665.1 + 14660 0.66 0.81964
Target:  5'- -uGAUCUacCGCGCAGGCAu--CCGUGa -3'
miRNA:   3'- agUUGGA--GCGUGUUCGUuguGGCACc -5'
17996 5' -51.5 NC_004665.1 + 25350 0.66 0.799765
Target:  5'- gCAGCCUucgggaCGUACAccgAGCAGCGCCa--- -3'
miRNA:   3'- aGUUGGA------GCGUGU---UCGUUGUGGcacc -5'
17996 5' -51.5 NC_004665.1 + 13244 0.67 0.779114
Target:  5'- -aGACCuUCGCugGGGCAccauACACCccGGu -3'
miRNA:   3'- agUUGG-AGCGugUUCGU----UGUGGcaCC- -5'
17996 5' -51.5 NC_004665.1 + 25410 0.67 0.768529
Target:  5'- aUCAuCCgcaaGCugAccccugAGCAGCGCCGUGa -3'
miRNA:   3'- -AGUuGGag--CGugU------UCGUUGUGGCACc -5'
17996 5' -51.5 NC_004665.1 + 21998 0.67 0.757788
Target:  5'- cCAAcCCUCGCACcgaccuGCGccucauCACUGUGGc -3'
miRNA:   3'- aGUU-GGAGCGUGuu----CGUu-----GUGGCACC- -5'
17996 5' -51.5 NC_004665.1 + 21036 0.68 0.72923
Target:  5'- -aGACCagCGCACcAGCAGCuucaggacgcagaccGCCGUGa -3'
miRNA:   3'- agUUGGa-GCGUGuUCGUUG---------------UGGCACc -5'
17996 5' -51.5 NC_004665.1 + 18803 0.68 0.702217
Target:  5'- cUCGGCCUCGgugaGC-AGCAGaccaGCCGUGu -3'
miRNA:   3'- -AGUUGGAGCg---UGuUCGUUg---UGGCACc -5'
17996 5' -51.5 NC_004665.1 + 35580 0.68 0.702217
Target:  5'- gCAGCCa-GCAUAGG-AGCcaGCCGUGGg -3'
miRNA:   3'- aGUUGGagCGUGUUCgUUG--UGGCACC- -5'
17996 5' -51.5 NC_004665.1 + 18617 0.68 0.687392
Target:  5'- -gGACCUCG-AUAAGCugacccaguuccugAACGCUGUGGc -3'
miRNA:   3'- agUUGGAGCgUGUUCG--------------UUGUGGCACC- -5'
17996 5' -51.5 NC_004665.1 + 16144 0.69 0.667859
Target:  5'- cUCAacGCCUCGUACcugaucGCcacuGGCAUCGUGGa -3'
miRNA:   3'- -AGU--UGGAGCGUGuu----CG----UUGUGGCACC- -5'
17996 5' -51.5 NC_004665.1 + 29703 0.7 0.610013
Target:  5'- uUCAGgUacagCGCACGGGCAGCAUCGUc- -3'
miRNA:   3'- -AGUUgGa---GCGUGUUCGUUGUGGCAcc -5'
17996 5' -51.5 NC_004665.1 + 21881 0.7 0.610012
Target:  5'- aUCAACCgggaCGCccaaGAGCAAUACuuCGUGGg -3'
miRNA:   3'- -AGUUGGa---GCGug--UUCGUUGUG--GCACC- -5'
17996 5' -51.5 NC_004665.1 + 27153 0.7 0.598462
Target:  5'- -gGGCCUCGCugAgaacccucaaugGGcCGACACCG-GGa -3'
miRNA:   3'- agUUGGAGCGugU------------UC-GUUGUGGCaCC- -5'
17996 5' -51.5 NC_004665.1 + 31058 0.71 0.519034
Target:  5'- -gGGCCUCGCaACGGGCuuCuuCGUGGc -3'
miRNA:   3'- agUUGGAGCG-UGUUCGuuGugGCACC- -5'
17996 5' -51.5 NC_004665.1 + 33251 0.71 0.507997
Target:  5'- uUCAGCCagagCGCACcAGCAacccggccaGCGuuGUGGa -3'
miRNA:   3'- -AGUUGGa---GCGUGuUCGU---------UGUggCACC- -5'
17996 5' -51.5 NC_004665.1 + 18585 0.72 0.49706
Target:  5'- aCGACUggUGCugAAGCAcuGgGCCGUGGu -3'
miRNA:   3'- aGUUGGa-GCGugUUCGU--UgUGGCACC- -5'
17996 5' -51.5 NC_004665.1 + 2314 0.72 0.475515
Target:  5'- aCAACCUCG-ACuGGCGugGCCG-GGu -3'
miRNA:   3'- aGUUGGAGCgUGuUCGUugUGGCaCC- -5'
17996 5' -51.5 NC_004665.1 + 32056 0.73 0.432877
Target:  5'- gUCAACCUCGCugAuggcgugaacgacGGUGAUGCUGUGa -3'
miRNA:   3'- -AGUUGGAGCGugU-------------UCGUUGUGGCACc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.