miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18000 3' -58.2 NC_004665.1 + 7414 0.66 0.3686
Target:  5'- cGAGGGUUGCCGaagcccuucucagGGUUGCcgaagucaGGCUUCUg -3'
miRNA:   3'- uCUUCCGACGGU-------------UCGACGa-------CCGGAGA- -5'
18000 3' -58.2 NC_004665.1 + 32599 0.67 0.343164
Target:  5'- uGAAGGUguucgcguUGCCcAGCuUGUcGGCCUCa -3'
miRNA:   3'- uCUUCCG--------ACGGuUCG-ACGaCCGGAGa -5'
18000 3' -58.2 NC_004665.1 + 24868 0.67 0.342309
Target:  5'- -cAGGGcCUGCauguugaccucagCGAGCUGCUuacgGGCCUCg -3'
miRNA:   3'- ucUUCC-GACG-------------GUUCGACGA----CCGGAGa -5'
18000 3' -58.2 NC_004665.1 + 12469 0.67 0.310197
Target:  5'- -uGAGGCUGCgAAGCcgGaUGGUCUCa -3'
miRNA:   3'- ucUUCCGACGgUUCGa-CgACCGGAGa -5'
18000 3' -58.2 NC_004665.1 + 11643 0.68 0.302341
Target:  5'- uGAAGGCUGCCAuugcGGCUacccaaGCUG-CCUa- -3'
miRNA:   3'- uCUUCCGACGGU----UCGA------CGACcGGAga -5'
18000 3' -58.2 NC_004665.1 + 35268 0.68 0.279697
Target:  5'- cAGAGGGCgagugGUCAGGCUugGCUGGaCC-Ca -3'
miRNA:   3'- -UCUUCCGa----CGGUUCGA--CGACC-GGaGa -5'
18000 3' -58.2 NC_004665.1 + 36057 0.68 0.277508
Target:  5'- uGAGGGCaacuucgGUgacgguauguacauCAAGCUGCUGGCCcCUg -3'
miRNA:   3'- uCUUCCGa------CG--------------GUUCGACGACCGGaGA- -5'
18000 3' -58.2 NC_004665.1 + 19317 0.68 0.272454
Target:  5'- cGAAGGCUucaGCCAgaugcgcgagcaAGCcaucaagGCUGGUCUCa -3'
miRNA:   3'- uCUUCCGA---CGGU------------UCGa------CGACCGGAGa -5'
18000 3' -58.2 NC_004665.1 + 9379 0.73 0.125098
Target:  5'- aAGAuGGaaGCCAAGUgGCUGGCCUUg -3'
miRNA:   3'- -UCUuCCgaCGGUUCGaCGACCGGAGa -5'
18000 3' -58.2 NC_004665.1 + 25395 0.74 0.107847
Target:  5'- cGAAGGCUGCacgcccgacuuaaCGAacuGCUGCaUGGCCUCa -3'
miRNA:   3'- uCUUCCGACG-------------GUU---CGACG-ACCGGAGa -5'
18000 3' -58.2 NC_004665.1 + 3158 1.08 0.000256
Target:  5'- cAGAAGGCUGCCAAGCUGCUGGCCUCUg -3'
miRNA:   3'- -UCUUCCGACGGUUCGACGACCGGAGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.