miRNA display CGI


Results 1 - 5 of 5 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18002 5' -55.9 NC_004665.1 + 9346 0.66 0.526505
Target:  5'- cUCCGUGAGGaUGCUc-GUGGGUCGCg -3'
miRNA:   3'- uGGGCACUCUcGCGGcaUACCUAGUG- -5'
18002 5' -55.9 NC_004665.1 + 22148 0.68 0.442605
Target:  5'- -gCCGUGGGuAG-GCCGcAUGGGUCAg -3'
miRNA:   3'- ugGGCACUC-UCgCGGCaUACCUAGUg -5'
18002 5' -55.9 NC_004665.1 + 12916 0.69 0.357956
Target:  5'- aGCCauUGAGuGUGuCCGUAUGGAgCACg -3'
miRNA:   3'- -UGGgcACUCuCGC-GGCAUACCUaGUG- -5'
18002 5' -55.9 NC_004665.1 + 25424 0.73 0.212947
Target:  5'- gACCCcUGAGcAGCGCCGUGaGGcaAUCGCc -3'
miRNA:   3'- -UGGGcACUC-UCGCGGCAUaCC--UAGUG- -5'
18002 5' -55.9 NC_004665.1 + 3931 1.08 0.000575
Target:  5'- aACCCGUGAGAGCGCCGUAUGGAUCACc -3'
miRNA:   3'- -UGGGCACUCUCGCGGCAUACCUAGUG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.