miRNA display CGI


Results 1 - 10 of 10 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18003 5' -57 NC_004665.1 + 17927 0.66 0.472244
Target:  5'- -cCGAGCAGGaGCUgGAGGUcuauACCCa- -3'
miRNA:   3'- caGCUCGUCCgCGAaCUUCG----UGGGcg -5'
18003 5' -57 NC_004665.1 + 29706 0.66 0.472244
Target:  5'- aGUCGAGCuggcuGGCGUccuacGCuuCCCGCg -3'
miRNA:   3'- -CAGCUCGu----CCGCGaacuuCGu-GGGCG- -5'
18003 5' -57 NC_004665.1 + 18575 0.67 0.431841
Target:  5'- gGUCGcuuGCAGuuGgUUGAgcAGCACUCGCa -3'
miRNA:   3'- -CAGCu--CGUCcgCgAACU--UCGUGGGCG- -5'
18003 5' -57 NC_004665.1 + 27946 0.68 0.393529
Target:  5'- aGUUGAGCuuuGGgGCUUGggGauuCCCa- -3'
miRNA:   3'- -CAGCUCGu--CCgCGAACuuCgu-GGGcg -5'
18003 5' -57 NC_004665.1 + 18569 0.68 0.369839
Target:  5'- uGUCGAGCcgaccguaacgacuGGUGC-UGAAGCACugggCCGUg -3'
miRNA:   3'- -CAGCUCGu-------------CCGCGaACUUCGUG----GGCG- -5'
18003 5' -57 NC_004665.1 + 22444 0.69 0.339521
Target:  5'- uGUCGuuGGCAGGgGCaUUGAugagaauccacccGGUGCCUGCu -3'
miRNA:   3'- -CAGC--UCGUCCgCG-AACU-------------UCGUGGGCG- -5'
18003 5' -57 NC_004665.1 + 12808 0.73 0.185791
Target:  5'- uUCGAGCuGGCGCaUGAAGUcguGCuuGUa -3'
miRNA:   3'- cAGCUCGuCCGCGaACUUCG---UGggCG- -5'
18003 5' -57 NC_004665.1 + 26236 0.74 0.144417
Target:  5'- uUCGcccGCAGGU-CUUGGAGCAUCCGCc -3'
miRNA:   3'- cAGCu--CGUCCGcGAACUUCGUGGGCG- -5'
18003 5' -57 NC_004665.1 + 4520 0.75 0.118249
Target:  5'- gGUCuucuuGGCGGGUGCUUcAAGCGCCUGCu -3'
miRNA:   3'- -CAGc----UCGUCCGCGAAcUUCGUGGGCG- -5'
18003 5' -57 NC_004665.1 + 4448 1.1 0.0003
Target:  5'- gGUCGAGCAGGCGCUUGAAGCACCCGCc -3'
miRNA:   3'- -CAGCUCGUCCGCGAACUUCGUGGGCG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.