miRNA display CGI


Results 1 - 4 of 4 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18004 3' -48.1 NC_004665.1 + 5218 0.66 0.935085
Target:  5'- gGUGAGGAagGUcugguguguaaaGACCCGAUGggcuucuaucgucgcUCCAAGGUg -3'
miRNA:   3'- -CAUUCCU--CG------------UUGGGUUAC---------------AGGUUUCA- -5'
18004 3' -48.1 NC_004665.1 + 18987 0.66 0.932723
Target:  5'- -cAAGGAGac-CUCAAUGUCCGAc-- -3'
miRNA:   3'- caUUCCUCguuGGGUUACAGGUUuca -5'
18004 3' -48.1 NC_004665.1 + 14450 0.71 0.670748
Target:  5'- cUAAGGAG-AACCCAAUGgCCAAGa- -3'
miRNA:   3'- cAUUCCUCgUUGGGUUACaGGUUUca -5'
18004 3' -48.1 NC_004665.1 + 4513 1.08 0.003518
Target:  5'- aGUAAGGAGCAACCCAAUGUCCAAAGUc -3'
miRNA:   3'- -CAUUCCUCGUUGGGUUACAGGUUUCA- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.