miRNA display CGI


Results 1 - 20 of 23 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18004 5' -51.9 NC_004665.1 + 13675 0.66 0.802986
Target:  5'- gUCGUCCaagUGGGCACCGaugcgagcGGCCuugagCUGCg -3'
miRNA:   3'- -AGUAGG---ACUUGUGGU--------UCGGcaa--GGCG- -5'
18004 5' -51.9 NC_004665.1 + 1329 0.66 0.782482
Target:  5'- aUCGggaCCaGAugACCGAGCagcgGUUUCGCu -3'
miRNA:   3'- -AGUa--GGaCUugUGGUUCGg---CAAGGCG- -5'
18004 5' -51.9 NC_004665.1 + 30710 0.66 0.782482
Target:  5'- aUCG-CCUGucgauCACCAAGCaacaGUUCgGUg -3'
miRNA:   3'- -AGUaGGACuu---GUGGUUCGg---CAAGgCG- -5'
18004 5' -51.9 NC_004665.1 + 5367 0.66 0.771965
Target:  5'- aCAUCCUGAAUgaaGCCAuccucguuGUCG-UCCGg -3'
miRNA:   3'- aGUAGGACUUG---UGGUu-------CGGCaAGGCg -5'
18004 5' -51.9 NC_004665.1 + 20457 0.66 0.771965
Target:  5'- gUUGUUCUGAACAUCGGuGCCG--CUGCu -3'
miRNA:   3'- -AGUAGGACUUGUGGUU-CGGCaaGGCG- -5'
18004 5' -51.9 NC_004665.1 + 5921 0.67 0.765577
Target:  5'- cUCGUCaccaaGGGCACCuuugcgcaaucccgaAAGCUGggCCGCa -3'
miRNA:   3'- -AGUAGga---CUUGUGG---------------UUCGGCaaGGCG- -5'
18004 5' -51.9 NC_004665.1 + 7286 0.67 0.761289
Target:  5'- --uUCCUGuucacuccagucGGCACCGcugAGCCGUaCUGCu -3'
miRNA:   3'- aguAGGAC------------UUGUGGU---UCGGCAaGGCG- -5'
18004 5' -51.9 NC_004665.1 + 7707 0.67 0.739511
Target:  5'- cCAUCgCUGGcgguuCCAAGCUGaaggUCCGCu -3'
miRNA:   3'- aGUAG-GACUugu--GGUUCGGCa---AGGCG- -5'
18004 5' -51.9 NC_004665.1 + 26499 0.67 0.728436
Target:  5'- aUCuUCCUGAcaacgugaaggACGCCAAGC-GUgCUGCa -3'
miRNA:   3'- -AGuAGGACU-----------UGUGGUUCGgCAaGGCG- -5'
18004 5' -51.9 NC_004665.1 + 25517 0.67 0.717255
Target:  5'- gUCAUCCUGAuACAgCAAgguGCCG-UUgGCg -3'
miRNA:   3'- -AGUAGGACU-UGUgGUU---CGGCaAGgCG- -5'
18004 5' -51.9 NC_004665.1 + 34457 0.68 0.68206
Target:  5'- aCAcCCUGAccaucaaACACCAAGCgGaaCUGCu -3'
miRNA:   3'- aGUaGGACU-------UGUGGUUCGgCaaGGCG- -5'
18004 5' -51.9 NC_004665.1 + 32391 0.68 0.671731
Target:  5'- uUCGUCCUac-CACUAcAGCCGUaagUCUGCu -3'
miRNA:   3'- -AGUAGGAcuuGUGGU-UCGGCA---AGGCG- -5'
18004 5' -51.9 NC_004665.1 + 26674 0.68 0.660216
Target:  5'- cUCA-CCaGAgcGCACCGAGuuGUUCCa- -3'
miRNA:   3'- -AGUaGGaCU--UGUGGUUCggCAAGGcg -5'
18004 5' -51.9 NC_004665.1 + 13082 0.69 0.63711
Target:  5'- aUCAgCCgaaagGuGGCACCGAGCaGUUCCGUc -3'
miRNA:   3'- -AGUaGGa----C-UUGUGGUUCGgCAAGGCG- -5'
18004 5' -51.9 NC_004665.1 + 3359 0.69 0.63711
Target:  5'- gUCG-CCgagGAACAUCAGGUCGaUUCGCc -3'
miRNA:   3'- -AGUaGGa--CUUGUGGUUCGGCaAGGCG- -5'
18004 5' -51.9 NC_004665.1 + 845 0.69 0.625544
Target:  5'- -gGUCUUGugugaGCCAAGCCGUaCaCGCa -3'
miRNA:   3'- agUAGGACuug--UGGUUCGGCAaG-GCG- -5'
18004 5' -51.9 NC_004665.1 + 22926 0.7 0.545349
Target:  5'- -gAUCCUGAaauACGCUguGCCGUUCUcugGCa -3'
miRNA:   3'- agUAGGACU---UGUGGuuCGGCAAGG---CG- -5'
18004 5' -51.9 NC_004665.1 + 4820 0.72 0.468742
Target:  5'- uUCAUgCUGGACGCUGAGuuGaUCCuGCu -3'
miRNA:   3'- -AGUAgGACUUGUGGUUCggCaAGG-CG- -5'
18004 5' -51.9 NC_004665.1 + 10588 0.72 0.437618
Target:  5'- cCAUCUgGAAUGCCcAGCCGUUCgUGCc -3'
miRNA:   3'- aGUAGGaCUUGUGGuUCGGCAAG-GCG- -5'
18004 5' -51.9 NC_004665.1 + 15454 0.73 0.41754
Target:  5'- gCAUCCUGAugACCAAucCCGgUCuCGCu -3'
miRNA:   3'- aGUAGGACUugUGGUUc-GGCaAG-GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.