miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18009 3' -48.7 NC_004665.1 + 3754 0.66 0.927297
Target:  5'- -cCCGCAccAACGcu-CGCCGCuccuuCGAGGa -3'
miRNA:   3'- uuGGCGU--UUGUuauGUGGUGu----GCUCC- -5'
18009 3' -48.7 NC_004665.1 + 23722 0.66 0.907343
Target:  5'- uGAUCgGCAAGCAGUACAcguuCCAgUACGAGu -3'
miRNA:   3'- -UUGG-CGUUUGUUAUGU----GGU-GUGCUCc -5'
18009 3' -48.7 NC_004665.1 + 30541 0.67 0.892447
Target:  5'- -uCCGCAAGCGGUcCACgAUgucagcucgACGAGGc -3'
miRNA:   3'- uuGGCGUUUGUUAuGUGgUG---------UGCUCC- -5'
18009 3' -48.7 NC_004665.1 + 27912 0.67 0.884533
Target:  5'- uGACUuCGAGCAAaACACCA-ACGGGGu -3'
miRNA:   3'- -UUGGcGUUUGUUaUGUGGUgUGCUCC- -5'
18009 3' -48.7 NC_004665.1 + 14966 0.67 0.876317
Target:  5'- uGACCaGC--GCAAUGCGCC-CACGAa- -3'
miRNA:   3'- -UUGG-CGuuUGUUAUGUGGuGUGCUcc -5'
18009 3' -48.7 NC_004665.1 + 25887 0.67 0.867806
Target:  5'- cACCGCccgaAGGCgAGUGCAUCACAUuGGGa -3'
miRNA:   3'- uUGGCG----UUUG-UUAUGUGGUGUGcUCC- -5'
18009 3' -48.7 NC_004665.1 + 31141 0.68 0.839642
Target:  5'- gAGCCuGCAcguAGCGuUGCGCCACgaagaagcccguuGCGAGGc -3'
miRNA:   3'- -UUGG-CGU---UUGUuAUGUGGUG-------------UGCUCC- -5'
18009 3' -48.7 NC_004665.1 + 2969 0.69 0.800778
Target:  5'- -cCCGUAggUGAgccACGCCAUAgCGAGGg -3'
miRNA:   3'- uuGGCGUuuGUUa--UGUGGUGU-GCUCC- -5'
18009 3' -48.7 NC_004665.1 + 18854 0.69 0.797648
Target:  5'- uACCGCAAgucccgagGCAAUggaguccgcuauggACACCGCugGGGu -3'
miRNA:   3'- uUGGCGUU--------UGUUA--------------UGUGGUGugCUCc -5'
18009 3' -48.7 NC_004665.1 + 36947 0.69 0.779581
Target:  5'- cACCGCAuccgcCAGaggcCACaCACACGAGGg -3'
miRNA:   3'- uUGGCGUuu---GUUau--GUG-GUGUGCUCC- -5'
18009 3' -48.7 NC_004665.1 + 23776 0.7 0.735159
Target:  5'- aGACCGCuGACGAUGgGuCCACcucgacCGAGGa -3'
miRNA:   3'- -UUGGCGuUUGUUAUgU-GGUGu-----GCUCC- -5'
18009 3' -48.7 NC_004665.1 + 2492 0.7 0.723715
Target:  5'- --gCGCAAGCAGUGgAUCAaggacaACGAGGa -3'
miRNA:   3'- uugGCGUUUGUUAUgUGGUg-----UGCUCC- -5'
18009 3' -48.7 NC_004665.1 + 24707 0.73 0.582045
Target:  5'- cGugCGCAGccAUAGUGcCGCC-CACGAGGg -3'
miRNA:   3'- -UugGCGUU--UGUUAU-GUGGuGUGCUCC- -5'
18009 3' -48.7 NC_004665.1 + 9724 1.09 0.003025
Target:  5'- cAACCGCAAACAAUACACCACACGAGGu -3'
miRNA:   3'- -UUGGCGUUUGUUAUGUGGUGUGCUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.