miRNA: 3'- gaGUAGCAG-GUUCga-GuCCAgCGGGC- -5'
miRNA: 3'- gaGUaGCAGGuUCGAGUCcAGCGGGC- -5'
miRNA: 3'- -GAGUAGC------AGGU---UCGAGUCCAGCGGgc -5'
miRNA: 3'- -GAGUAGCAGGUUCGAGUCCAGCGGGC- -5'
Results 1 - 4 of 4 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 18013 | 3' | -56.2 | NC_004665.1 | + | 11605 | 0.67 | 0.51711 |
|
Target: 5'- -gCGUCGUCaCGAGaagCuGGUgGCCCGu -3' miRNA: 3'- gaGUAGCAG-GUUCga-GuCCAgCGGGC- -5' |
|||||||
| 18013 | 3' | -56.2 | NC_004665.1 | + | 28111 | 0.71 | 0.287883 |
|
Target: 5'- -cCAgCGUCCcGGCUCAGaUCGCUCGg -3' miRNA: 3'- gaGUaGCAGGuUCGAGUCcAGCGGGC- -5' |
|||||||
| 18013 | 3' | -56.2 | NC_004665.1 | + | 18196 | 0.73 | 0.209765 |
|
Target: 5'- cCUCAUUGagcgacUCCAgagAGUUCAGGUCGCCg- -3' miRNA: 3'- -GAGUAGC------AGGU---UCGAGUCCAGCGGgc -5' |
|||||||
| 18013 | 3' | -56.2 | NC_004665.1 | + | 15872 | 1.08 | 0.00056 |
|
Target: 5'- cCUCAUCGUCCAAGCUCAGGUCGCCCGu -3' miRNA: 3'- -GAGUAGCAGGUUCGAGUCCAGCGGGC- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home