miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18014 3' -52.2 NC_004665.1 + 36498 0.66 0.752489
Target:  5'- -gGCGuCCUCcAUGUGGCuCUC-AAGGAa -3'
miRNA:   3'- agCGU-GGAGuUACGCUG-GAGaUUCCU- -5'
18014 3' -52.2 NC_004665.1 + 12059 0.66 0.741518
Target:  5'- gUGguCCUCAAUGgGACUcCgugAAGGAc -3'
miRNA:   3'- aGCguGGAGUUACgCUGGaGa--UUCCU- -5'
18014 3' -52.2 NC_004665.1 + 61 0.67 0.696536
Target:  5'- ---aGCCUCuccccgGUGACCUCUGAGuGAg -3'
miRNA:   3'- agcgUGGAGuua---CGCUGGAGAUUC-CU- -5'
18014 3' -52.2 NC_004665.1 + 37167 0.67 0.696536
Target:  5'- ---aGCCUCuccccgGUGACCUCUGAGuGAg -3'
miRNA:   3'- agcgUGGAGuua---CGCUGGAGAUUC-CU- -5'
18014 3' -52.2 NC_004665.1 + 3163 0.67 0.685084
Target:  5'- -gGCugC-CAAgcUGCuGGCCUCUGAGGu -3'
miRNA:   3'- agCGugGaGUU--ACG-CUGGAGAUUCCu -5'
18014 3' -52.2 NC_004665.1 + 36874 0.68 0.62723
Target:  5'- cUC-CAcCCUCGuguGUGUGGCCUCUGGcGGAu -3'
miRNA:   3'- -AGcGU-GGAGU---UACGCUGGAGAUU-CCU- -5'
18014 3' -52.2 NC_004665.1 + 4952 0.68 0.615627
Target:  5'- aUCGUGCCUCuggacGUGAUCgCUGAGGGc -3'
miRNA:   3'- -AGCGUGGAGuua--CGCUGGaGAUUCCU- -5'
18014 3' -52.2 NC_004665.1 + 6512 0.69 0.580955
Target:  5'- gCGCAUgUCGGUGaCGACCacgAGGGAa -3'
miRNA:   3'- aGCGUGgAGUUAC-GCUGGagaUUCCU- -5'
18014 3' -52.2 NC_004665.1 + 10534 0.69 0.558059
Target:  5'- -aGUACCUCA--GCGGCCUcCUGAGaGGc -3'
miRNA:   3'- agCGUGGAGUuaCGCUGGA-GAUUC-CU- -5'
18014 3' -52.2 NC_004665.1 + 14847 0.7 0.546705
Target:  5'- -aGUACCUC---GUGAcCCUCUGGGGAc -3'
miRNA:   3'- agCGUGGAGuuaCGCU-GGAGAUUCCU- -5'
18014 3' -52.2 NC_004665.1 + 12419 0.75 0.294121
Target:  5'- aCGCGCUUCAAUGaggccACCUUUGGGGAc -3'
miRNA:   3'- aGCGUGGAGUUACgc---UGGAGAUUCCU- -5'
18014 3' -52.2 NC_004665.1 + 19566 1.1 0.001081
Target:  5'- gUCGCACCUCAAUGCGACCUCUAAGGAc -3'
miRNA:   3'- -AGCGUGGAGUUACGCUGGAGAUUCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.