miRNA display CGI


Results 1 - 20 of 23 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18017 5' -58.4 NC_004665.1 + 27651 0.66 0.457348
Target:  5'- -aGCCuugCCGGUCGCCUuggugAACuGGCccaGACCCa -3'
miRNA:   3'- agUGG---GGUCGGCGGA-----UUG-CCG---UUGGG- -5'
18017 5' -58.4 NC_004665.1 + 32571 0.66 0.457348
Target:  5'- -gGCCUCAGUCuucgcucggucgGCCUGAgUGGUuGCCCg -3'
miRNA:   3'- agUGGGGUCGG------------CGGAUU-GCCGuUGGG- -5'
18017 5' -58.4 NC_004665.1 + 18878 0.66 0.457348
Target:  5'- -gACCCCAGa-GCCaauaccAGCGGCAgcguugaggccACCCu -3'
miRNA:   3'- agUGGGGUCggCGGa-----UUGCCGU-----------UGGG- -5'
18017 5' -58.4 NC_004665.1 + 16108 0.66 0.447414
Target:  5'- aUCGCUCCAGCCGCU--GCuGaguACCUc -3'
miRNA:   3'- -AGUGGGGUCGGCGGauUGcCgu-UGGG- -5'
18017 5' -58.4 NC_004665.1 + 13265 0.66 0.427912
Target:  5'- aCACCCCGGUCGaguuCgUAACcuuCAACCCa -3'
miRNA:   3'- aGUGGGGUCGGC----GgAUUGcc-GUUGGG- -5'
18017 5' -58.4 NC_004665.1 + 6431 0.66 0.418351
Target:  5'- cUCGCCCUugAGuuGC--GACGGaAGCCCg -3'
miRNA:   3'- -AGUGGGG--UCggCGgaUUGCCgUUGGG- -5'
18017 5' -58.4 NC_004665.1 + 27055 0.66 0.412677
Target:  5'- aCGCUCCguGGUCGUCUAuccaagaaggcccucAUGGCuGACCCa -3'
miRNA:   3'- aGUGGGG--UCGGCGGAU---------------UGCCG-UUGGG- -5'
18017 5' -58.4 NC_004665.1 + 1406 0.67 0.399625
Target:  5'- aCGCCCCaagGGCCacauGCUU-GCGGCgAACCUu -3'
miRNA:   3'- aGUGGGG---UCGG----CGGAuUGCCG-UUGGG- -5'
18017 5' -58.4 NC_004665.1 + 3226 0.67 0.381444
Target:  5'- -aAUgCCGGUcuauugggucaCGCCUGAUGGCuuCCCg -3'
miRNA:   3'- agUGgGGUCG-----------GCGGAUUGCCGuuGGG- -5'
18017 5' -58.4 NC_004665.1 + 28690 0.67 0.371682
Target:  5'- gUCugCCUaaccgugacguugAGCUGCCUGAaGGCAuggcACCUg -3'
miRNA:   3'- -AGugGGG-------------UCGGCGGAUUgCCGU----UGGG- -5'
18017 5' -58.4 NC_004665.1 + 30796 0.68 0.314418
Target:  5'- aUCAaggaCCCGGCUGCUcuGCGcaGUGACCCa -3'
miRNA:   3'- -AGUg---GGGUCGGCGGauUGC--CGUUGGG- -5'
18017 5' -58.4 NC_004665.1 + 2251 0.69 0.29464
Target:  5'- aCACCCCAGCggcugccuucuuccaCGCCUucaaGGCuuCCUc -3'
miRNA:   3'- aGUGGGGUCG---------------GCGGAuug-CCGuuGGG- -5'
18017 5' -58.4 NC_004665.1 + 6865 0.69 0.277256
Target:  5'- -aACaCCCGGUCgauGCCUGAUGGCuuCCUg -3'
miRNA:   3'- agUG-GGGUCGG---CGGAUUGCCGuuGGG- -5'
18017 5' -58.4 NC_004665.1 + 14522 0.71 0.219317
Target:  5'- aCACCaUCA-CCGCuCUGAaGGCAACCCg -3'
miRNA:   3'- aGUGG-GGUcGGCG-GAUUgCCGUUGGG- -5'
18017 5' -58.4 NC_004665.1 + 34002 0.71 0.219317
Target:  5'- -aGCUCCAGCgGCgaUAGgGGCAGCUCg -3'
miRNA:   3'- agUGGGGUCGgCGg-AUUgCCGUUGGG- -5'
18017 5' -58.4 NC_004665.1 + 14880 0.72 0.18669
Target:  5'- uUCAUCCCGGCCaCCgu-UGGCGAUCUu -3'
miRNA:   3'- -AGUGGGGUCGGcGGauuGCCGUUGGG- -5'
18017 5' -58.4 NC_004665.1 + 10533 0.72 0.181687
Target:  5'- gUACCUCAGCgGCCUccugagaGGCuGCCCg -3'
miRNA:   3'- aGUGGGGUCGgCGGAuug----CCGuUGGG- -5'
18017 5' -58.4 NC_004665.1 + 11637 0.72 0.176803
Target:  5'- cCGCUCUgaaGGCUGCCauuGCGGCuACCCa -3'
miRNA:   3'- aGUGGGG---UCGGCGGau-UGCCGuUGGG- -5'
18017 5' -58.4 NC_004665.1 + 27354 0.72 0.167385
Target:  5'- uUCugCUCAGCCGCUgcugcuUGGCGAgCCu -3'
miRNA:   3'- -AGugGGGUCGGCGGauu---GCCGUUgGG- -5'
18017 5' -58.4 NC_004665.1 + 7324 0.73 0.145781
Target:  5'- cUCGaUCCAGaaGCCUGAcuuCGGCAACCCu -3'
miRNA:   3'- -AGUgGGGUCggCGGAUU---GCCGUUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.