miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18020 5' -59 NC_004665.1 + 23510 0.66 0.394484
Target:  5'- gGUgUGUUGcGUGAacUCCAUGCGCUcaaGGCa -3'
miRNA:   3'- aCGgGCGAC-CACU--GGGUAUGCGA---CCG- -5'
18020 5' -59 NC_004665.1 + 1682 0.67 0.349546
Target:  5'- aUGUCCGCuaccacaUGG-GcAUCCGUAUGCUGGa -3'
miRNA:   3'- -ACGGGCG-------ACCaC-UGGGUAUGCGACCg -5'
18020 5' -59 NC_004665.1 + 35516 0.67 0.342004
Target:  5'- gGCCCaC-GGcUGGCUCcUAUGCUGGCu -3'
miRNA:   3'- aCGGGcGaCC-ACUGGGuAUGCGACCG- -5'
18020 5' -59 NC_004665.1 + 28422 0.67 0.333762
Target:  5'- gUGCCCggugguGCUGGUGcCUCGUuCGCUgcccgugugGGCa -3'
miRNA:   3'- -ACGGG------CGACCACuGGGUAuGCGA---------CCG- -5'
18020 5' -59 NC_004665.1 + 10646 0.67 0.332946
Target:  5'- gGCCCGCUugaaggagaagaaGGUGAUCCcuuCGCUuccucugguGGCc -3'
miRNA:   3'- aCGGGCGA-------------CCACUGGGuauGCGA---------CCG- -5'
18020 5' -59 NC_004665.1 + 18245 0.68 0.302262
Target:  5'- gGCUCaGaCUGGUGACuUCGUG-GCUGGCc -3'
miRNA:   3'- aCGGG-C-GACCACUG-GGUAUgCGACCG- -5'
18020 5' -59 NC_004665.1 + 27081 0.68 0.301505
Target:  5'- gGCCCucaUGGcUGACCCAgcagACGUuaacucgUGGCa -3'
miRNA:   3'- aCGGGcg-ACC-ACUGGGUa---UGCG-------ACCG- -5'
18020 5' -59 NC_004665.1 + 24063 0.69 0.252747
Target:  5'- aGCUgGUgaUGGUGACUCGUugGUUgacGGCa -3'
miRNA:   3'- aCGGgCG--ACCACUGGGUAugCGA---CCG- -5'
18020 5' -59 NC_004665.1 + 11609 0.71 0.19911
Target:  5'- cGUCacgagaaGCUGGUGGCCCGUGaggcCGCUcugaaGGCu -3'
miRNA:   3'- aCGGg------CGACCACUGGGUAU----GCGA-----CCG- -5'
18020 5' -59 NC_004665.1 + 20221 0.73 0.143202
Target:  5'- aGCCC-UUGGUGcgGCCCAUGaccgggaaGCUGGCc -3'
miRNA:   3'- aCGGGcGACCAC--UGGGUAUg-------CGACCG- -5'
18020 5' -59 NC_004665.1 + 22243 1.12 0.000145
Target:  5'- gUGCCCGCUGGUGACCCAUACGCUGGCa -3'
miRNA:   3'- -ACGGGCGACCACUGGGUAUGCGACCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.