miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18021 5' -51.5 NC_004665.1 + 23010 1.09 0.001297
Target:  5'- cUGUCGAGCAAGACCAUCGAGCUUGACc -3'
miRNA:   3'- -ACAGCUCGUUCUGGUAGCUCGAACUG- -5'
18021 5' -51.5 NC_004665.1 + 19146 0.67 0.751206
Target:  5'- aGUCGAGCuGGGCac-CGAGCagGAUc -3'
miRNA:   3'- aCAGCUCGuUCUGguaGCUCGaaCUG- -5'
18021 5' -51.5 NC_004665.1 + 16619 0.68 0.692336
Target:  5'- cGUCuGAGgGAGAUCAUUGAGCaguucccugagaUGACa -3'
miRNA:   3'- aCAG-CUCgUUCUGGUAGCUCGa-----------ACUG- -5'
18021 5' -51.5 NC_004665.1 + 11121 0.68 0.659776
Target:  5'- --aCGAGCGuaAGACCAUCGAccGaCUgaUGACa -3'
miRNA:   3'- acaGCUCGU--UCUGGUAGCU--C-GA--ACUG- -5'
18021 5' -51.5 NC_004665.1 + 22992 0.69 0.589574
Target:  5'- cUGUCGAGCAAGACCAUCn-------- -3'
miRNA:   3'- -ACAGCUCGUUCUGGUAGcucgaacug -5'
18021 5' -51.5 NC_004665.1 + 34741 0.72 0.455353
Target:  5'- -aUCGAGCAAGcCCAgCGAGCa-GACg -3'
miRNA:   3'- acAGCUCGUUCuGGUaGCUCGaaCUG- -5'
18021 5' -51.5 NC_004665.1 + 23840 0.74 0.322251
Target:  5'- gGUCGAGguGGAcCCAUCGucagcggucuGCUUGAUg -3'
miRNA:   3'- aCAGCUCguUCU-GGUAGCu---------CGAACUG- -5'
18021 5' -51.5 NC_004665.1 + 36870 0.69 0.624643
Target:  5'- gUGaCGAGCAgaAGGCCGaUGAGCUUGu- -3'
miRNA:   3'- -ACaGCUCGU--UCUGGUaGCUCGAACug -5'
18021 5' -51.5 NC_004665.1 + 12028 0.68 0.671445
Target:  5'- gGUCGcuGCGaccugcucggAGACCAUCGA-CUUGAUg -3'
miRNA:   3'- aCAGCu-CGU----------UCUGGUAGCUcGAACUG- -5'
18021 5' -51.5 NC_004665.1 + 2721 0.67 0.728897
Target:  5'- --cCGAGCAAGaACCGUCGAaggcaaucgGCagGGCg -3'
miRNA:   3'- acaGCUCGUUC-UGGUAGCU---------CGaaCUG- -5'
18021 5' -51.5 NC_004665.1 + 18253 0.66 0.78255
Target:  5'- cGUUGGGguucaCAAGGCCGacgaccuUCGAGCUaaucaUGGCg -3'
miRNA:   3'- aCAGCUC-----GUUCUGGU-------AGCUCGA-----ACUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.