miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18025 3' -55.7 NC_004665.1 + 11758 0.66 0.551141
Target:  5'- -uUGGugaCG-CCAGUCgGCCUGUAcGCg -3'
miRNA:   3'- auACCug-GCuGGUCAG-CGGACGUuCG- -5'
18025 3' -55.7 NC_004665.1 + 13142 0.66 0.529003
Target:  5'- cGUGGACCaaugGGCCGuUCGCUgGuCAAGCc -3'
miRNA:   3'- aUACCUGG----CUGGUcAGCGGaC-GUUCG- -5'
18025 3' -55.7 NC_004665.1 + 26160 0.67 0.507201
Target:  5'- -cUGaGACCGGCUGG-CGgaugcuccaagaCCUGCGGGCg -3'
miRNA:   3'- auAC-CUGGCUGGUCaGC------------GGACGUUCG- -5'
18025 3' -55.7 NC_004665.1 + 22965 0.67 0.490039
Target:  5'- cUGUGGuCCGACCAagcucaguucguucuGUCGagcaagaccauCCUGuCGAGCa -3'
miRNA:   3'- -AUACCuGGCUGGU---------------CAGC-----------GGAC-GUUCG- -5'
18025 3' -55.7 NC_004665.1 + 28733 0.67 0.475247
Target:  5'- ---aGGCaGACCAGcuUCGCCgugGCGAGCc -3'
miRNA:   3'- auacCUGgCUGGUC--AGCGGa--CGUUCG- -5'
18025 3' -55.7 NC_004665.1 + 35242 0.69 0.386072
Target:  5'- --aGGuaucACCGGCCAGUUGaCUGguAGCc -3'
miRNA:   3'- auaCC----UGGCUGGUCAGCgGACguUCG- -5'
18025 3' -55.7 NC_004665.1 + 9294 0.69 0.385144
Target:  5'- --aGGGgCGACCAuUCGCUucaugggUGCGAGCc -3'
miRNA:   3'- auaCCUgGCUGGUcAGCGG-------ACGUUCG- -5'
18025 3' -55.7 NC_004665.1 + 28578 0.7 0.341536
Target:  5'- aGUGGccuUCGauGCCAGUgGCCUGCucGCg -3'
miRNA:   3'- aUACCu--GGC--UGGUCAgCGGACGuuCG- -5'
18025 3' -55.7 NC_004665.1 + 1314 0.7 0.32479
Target:  5'- -uUGGAUCGAacaCCAGaccaccaagguUCGCC-GCAAGCa -3'
miRNA:   3'- auACCUGGCU---GGUC-----------AGCGGaCGUUCG- -5'
18025 3' -55.7 NC_004665.1 + 16517 0.71 0.285632
Target:  5'- cAUGGGCaaGACCAucucugCGCCUGuCAAGCg -3'
miRNA:   3'- aUACCUGg-CUGGUca----GCGGAC-GUUCG- -5'
18025 3' -55.7 NC_004665.1 + 28901 1.09 0.000486
Target:  5'- cUAUGGACCGACCAGUCGCCUGCAAGCc -3'
miRNA:   3'- -AUACCUGGCUGGUCAGCGGACGUUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.