miRNA display CGI

Results 1 - 13 of 13 are showing below:
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ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
18027	3'	-51.3	NC_004665.1	+	30874	0.66	0.817541
	Target:  5'- cCAUUGUCcGUgGGUCACUgcgcaGAGCAGCc -3' miRNA:   3'- cGUAGCGGaCAgCUAGUGG-----UUCGUUG- -5'
18027	3'	-51.3	NC_004665.1	+	26393	0.67	0.754786
	Target:  5'- ---gUGUCUGUCGAUC-CCAAGUuccAACc -3' miRNA:   3'- cguaGCGGACAGCUAGuGGUUCG---UUG- -5'
18027	3'	-51.3	NC_004665.1	+	8713	0.67	0.754786
	Target:  5'- cGCAUCGCucaagcugCUGcUGAUCGCCAacaAGCGu- -3' miRNA:   3'- -CGUAGCG--------GACaGCUAGUGGU---UCGUug -5'
18027	3'	-51.3	NC_004665.1	+	17005	0.67	0.743753
	Target:  5'- ----gGCCguuaaGUCGGUCACCAAG-AGCg -3' miRNA:   3'- cguagCGGa----CAGCUAGUGGUUCgUUG- -5'
18027	3'	-51.3	NC_004665.1	+	22153	0.67	0.732592
	Target:  5'- -gGUCGaacCCUGUCGAUCACaaucaacGGUGACg -3' miRNA:   3'- cgUAGC---GGACAGCUAGUGgu-----UCGUUG- -5'
18027	3'	-51.3	NC_004665.1	+	25344	0.69	0.65204
	Target:  5'- gGCAgugcaGCCU-UCGGgacguaCACCGAGCAGCg -3' miRNA:   3'- -CGUag---CGGAcAGCUa-----GUGGUUCGUUG- -5'
18027	3'	-51.3	NC_004665.1	+	3377	0.69	0.628644
	Target:  5'- -gGUCGCUUGaaugCGAacgUCGCCGAGgAACa -3' miRNA:   3'- cgUAGCGGACa---GCU---AGUGGUUCgUUG- -5'
18027	3'	-51.3	NC_004665.1	+	29800	0.69	0.616946
	Target:  5'- gGCAaCGCCUGagcUGAUCGCCcAGCGu- -3' miRNA:   3'- -CGUaGCGGACa--GCUAGUGGuUCGUug -5'
18027	3'	-51.3	NC_004665.1	+	14409	0.7	0.593604
	Target:  5'- cGCGauaGCCUGUUGGgcCACCuuAGCGACg -3' miRNA:   3'- -CGUag-CGGACAGCUa-GUGGu-UCGUUG- -5'
18027	3'	-51.3	NC_004665.1	+	23476	0.7	0.580824
	Target:  5'- -aGUC-CCUcuggacgGUCGAUCAUCAGGUAGCa -3' miRNA:   3'- cgUAGcGGA-------CAGCUAGUGGUUCGUUG- -5'
18027	3'	-51.3	NC_004665.1	+	16236	0.7	0.57041
	Target:  5'- uGCuaaCGCugCUGUCGAgaUCACCGAGCugauGCa -3' miRNA:   3'- -CGua-GCG--GACAGCU--AGUGGUUCGu---UG- -5'
18027	3'	-51.3	NC_004665.1	+	13173	0.75	0.300875
	Target:  5'- -aGUgGCUUGUCGcUCACCGGGUGACg -3' miRNA:   3'- cgUAgCGGACAGCuAGUGGUUCGUUG- -5'
18027	3'	-51.3	NC_004665.1	+	30707	1.13	0.000771
	Target:  5'- uGCAUCGCCUGUCGAUCACCAAGCAACa -3' miRNA:   3'- -CGUAGCGGACAGCUAGUGGUUCGUUG- -5'

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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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