miRNA display CGI


Results 1 - 13 of 13 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18027 3' -51.3 NC_004665.1 + 30874 0.66 0.817541
Target:  5'- cCAUUGUCcGUgGGUCACUgcgcaGAGCAGCc -3'
miRNA:   3'- cGUAGCGGaCAgCUAGUGG-----UUCGUUG- -5'
18027 3' -51.3 NC_004665.1 + 8713 0.67 0.754786
Target:  5'- cGCAUCGCucaagcugCUGcUGAUCGCCAacaAGCGu- -3'
miRNA:   3'- -CGUAGCG--------GACaGCUAGUGGU---UCGUug -5'
18027 3' -51.3 NC_004665.1 + 26393 0.67 0.754786
Target:  5'- ---gUGUCUGUCGAUC-CCAAGUuccAACc -3'
miRNA:   3'- cguaGCGGACAGCUAGuGGUUCG---UUG- -5'
18027 3' -51.3 NC_004665.1 + 17005 0.67 0.743753
Target:  5'- ----gGCCguuaaGUCGGUCACCAAG-AGCg -3'
miRNA:   3'- cguagCGGa----CAGCUAGUGGUUCgUUG- -5'
18027 3' -51.3 NC_004665.1 + 22153 0.67 0.732592
Target:  5'- -gGUCGaacCCUGUCGAUCACaaucaacGGUGACg -3'
miRNA:   3'- cgUAGC---GGACAGCUAGUGgu-----UCGUUG- -5'
18027 3' -51.3 NC_004665.1 + 25344 0.69 0.65204
Target:  5'- gGCAgugcaGCCU-UCGGgacguaCACCGAGCAGCg -3'
miRNA:   3'- -CGUag---CGGAcAGCUa-----GUGGUUCGUUG- -5'
18027 3' -51.3 NC_004665.1 + 3377 0.69 0.628644
Target:  5'- -gGUCGCUUGaaugCGAacgUCGCCGAGgAACa -3'
miRNA:   3'- cgUAGCGGACa---GCU---AGUGGUUCgUUG- -5'
18027 3' -51.3 NC_004665.1 + 29800 0.69 0.616946
Target:  5'- gGCAaCGCCUGagcUGAUCGCCcAGCGu- -3'
miRNA:   3'- -CGUaGCGGACa--GCUAGUGGuUCGUug -5'
18027 3' -51.3 NC_004665.1 + 14409 0.7 0.593604
Target:  5'- cGCGauaGCCUGUUGGgcCACCuuAGCGACg -3'
miRNA:   3'- -CGUag-CGGACAGCUa-GUGGu-UCGUUG- -5'
18027 3' -51.3 NC_004665.1 + 23476 0.7 0.580824
Target:  5'- -aGUC-CCUcuggacgGUCGAUCAUCAGGUAGCa -3'
miRNA:   3'- cgUAGcGGA-------CAGCUAGUGGUUCGUUG- -5'
18027 3' -51.3 NC_004665.1 + 16236 0.7 0.57041
Target:  5'- uGCuaaCGCugCUGUCGAgaUCACCGAGCugauGCa -3'
miRNA:   3'- -CGua-GCG--GACAGCU--AGUGGUUCGu---UG- -5'
18027 3' -51.3 NC_004665.1 + 13173 0.75 0.300875
Target:  5'- -aGUgGCUUGUCGcUCACCGGGUGACg -3'
miRNA:   3'- cgUAgCGGACAGCuAGUGGUUCGUUG- -5'
18027 3' -51.3 NC_004665.1 + 30707 1.13 0.000771
Target:  5'- uGCAUCGCCUGUCGAUCACCAAGCAACa -3'
miRNA:   3'- -CGUAGCGGACAGCUAGUGGUUCGUUG- -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.