miRNA display CGI


Results 1 - 10 of 10 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18027 5' -47.6 NC_004665.1 + 20616 0.66 0.94002
Target:  5'- -gAUCAccAGCAGGgacguaguucuUGGUCAGGcGAGCACg -3'
miRNA:   3'- ugUAGU--UCGUUC-----------GCUAGUUC-CUUGUG- -5'
18027 5' -47.6 NC_004665.1 + 12258 0.67 0.907978
Target:  5'- uAC-UCAGGCGAGCGGU---GGuAGCGCa -3'
miRNA:   3'- -UGuAGUUCGUUCGCUAguuCC-UUGUG- -5'
18027 5' -47.6 NC_004665.1 + 4436 0.67 0.90579
Target:  5'- cACGUCGgucacagagcuucuGGCgAGGCGAUCuuGGcGAGCGCu -3'
miRNA:   3'- -UGUAGU--------------UCG-UUCGCUAGu-UC-CUUGUG- -5'
18027 5' -47.6 NC_004665.1 + 4155 0.67 0.903572
Target:  5'- --uUCAGGUAgcggaugguuuguugGGCGAugUCGAGGGACAg -3'
miRNA:   3'- uguAGUUCGU---------------UCGCU--AGUUCCUUGUg -5'
18027 5' -47.6 NC_004665.1 + 29766 0.68 0.867719
Target:  5'- uCAUCAAGgAAGCaAUCGagaAGGAAgGCa -3'
miRNA:   3'- uGUAGUUCgUUCGcUAGU---UCCUUgUG- -5'
18027 5' -47.6 NC_004665.1 + 2031 0.68 0.865057
Target:  5'- gACAUCGcGguAGCGGUUGAgcgcucgcuuugucGGGACACg -3'
miRNA:   3'- -UGUAGUuCguUCGCUAGUU--------------CCUUGUG- -5'
18027 5' -47.6 NC_004665.1 + 31811 0.69 0.849475
Target:  5'- cACGUCGAGUugcacCGAUCAAGGugacCACa -3'
miRNA:   3'- -UGUAGUUCGuuc--GCUAGUUCCuu--GUG- -5'
18027 5' -47.6 NC_004665.1 + 26420 0.7 0.788484
Target:  5'- gACAUCGGuGCGGGCGAguggaAAGGcguaGACGCa -3'
miRNA:   3'- -UGUAGUU-CGUUCGCUag---UUCC----UUGUG- -5'
18027 5' -47.6 NC_004665.1 + 11838 0.71 0.759665
Target:  5'- aGCAaggCGAGCAGGCGGUCGAuguucucaagucgcuGGGcuACACc -3'
miRNA:   3'- -UGUa--GUUCGUUCGCUAGUU---------------CCU--UGUG- -5'
18027 5' -47.6 NC_004665.1 + 30742 1.12 0.002181
Target:  5'- gACAUCAAGCAAGCGAUCAAGGAACACa -3'
miRNA:   3'- -UGUAGUUCGUUCGCUAGUUCCUUGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.