miRNA display CGI


Results 1 - 7 of 7 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18028 5' -58 NC_004665.1 + 29079 0.66 0.460093
Target:  5'- --cACGcUCGCCGGGGuuGuCCGCa--- -3'
miRNA:   3'- auuUGC-AGUGGCCCCggC-GGUGguac -5'
18028 5' -58 NC_004665.1 + 24516 0.66 0.454036
Target:  5'- -cAAC-UCACuCGGGGCUGUcuucgcuaaggagcaCACCAUGa -3'
miRNA:   3'- auUUGcAGUG-GCCCCGGCG---------------GUGGUAC- -5'
18028 5' -58 NC_004665.1 + 37225 0.67 0.401574
Target:  5'- cAGAgGUCACCGGGGagagGCUcCUAUGg -3'
miRNA:   3'- aUUUgCAGUGGCCCCgg--CGGuGGUAC- -5'
18028 5' -58 NC_004665.1 + 119 0.67 0.401574
Target:  5'- cAGAgGUCACCGGGGagagGCUcCUAUGg -3'
miRNA:   3'- aUUUgCAGUGGCCCCgg--CGGuGGUAC- -5'
18028 5' -58 NC_004665.1 + 3113 0.7 0.256826
Target:  5'- gUGAGCGUCGuuGuGGUCGCUGCUGUGg -3'
miRNA:   3'- -AUUUGCAGUggCcCCGGCGGUGGUAC- -5'
18028 5' -58 NC_004665.1 + 15697 0.7 0.24368
Target:  5'- ------aCACCGGGGauGCCACCAUa -3'
miRNA:   3'- auuugcaGUGGCCCCggCGGUGGUAc -5'
18028 5' -58 NC_004665.1 + 32758 1.05 0.000544
Target:  5'- cUAAACGUCACCGGGGCCGCCACCAUGc -3'
miRNA:   3'- -AUUUGCAGUGGCCCCGGCGGUGGUAC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.