Results 1 - 11 of 11 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18030 | 3' | -52.9 | NC_004665.1 | + | 2879 | 0.76 | 0.190186 |
Target: 5'- cGugGAAUCCUCGguGCCGUaCUUCAAGu -3' miRNA: 3'- -UugUUUGGGAGCguCGGUA-GAGGUUC- -5' |
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18030 | 3' | -52.9 | NC_004665.1 | + | 6083 | 0.66 | 0.704245 |
Target: 5'- gGGCAAagacACCCUCGUugAGCU-UCUCCGu- -3' miRNA: 3'- -UUGUU----UGGGAGCG--UCGGuAGAGGUuc -5' |
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18030 | 3' | -52.9 | NC_004665.1 | + | 9208 | 0.72 | 0.337711 |
Target: 5'- -cCAGAcCCCUUGCAGCCGa-UCCGAGu -3' miRNA: 3'- uuGUUU-GGGAGCGUCGGUagAGGUUC- -5' |
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18030 | 3' | -52.9 | NC_004665.1 | + | 12532 | 0.66 | 0.679967 |
Target: 5'- gAugAGACCauccggcUUCGCAGCCucagCUUCGAGg -3' miRNA: 3'- -UugUUUGG-------GAGCGUCGGua--GAGGUUC- -5' |
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18030 | 3' | -52.9 | NC_004665.1 | + | 21105 | 0.66 | 0.669485 |
Target: 5'- aAACAGAUgacgaaCUCGCAGCCAUCaaCGAc -3' miRNA: 3'- -UUGUUUGg-----GAGCGUCGGUAGagGUUc -5' |
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18030 | 3' | -52.9 | NC_004665.1 | + | 24921 | 0.66 | 0.69272 |
Target: 5'- aAGCGAGCCa--GCAGCgCAUgUCCAu- -3' miRNA: 3'- -UUGUUUGGgagCGUCG-GUAgAGGUuc -5' |
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18030 | 3' | -52.9 | NC_004665.1 | + | 30565 | 0.67 | 0.646091 |
Target: 5'- gAACuGGCCgCUCGCAGuCCGUUcaCCAAGc -3' miRNA: 3'- -UUGuUUGG-GAGCGUC-GGUAGa-GGUUC- -5' |
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18030 | 3' | -52.9 | NC_004665.1 | + | 33506 | 0.67 | 0.634365 |
Target: 5'- cAACAGGCCCuUCGgGGCCuUCUUUAu- -3' miRNA: 3'- -UUGUUUGGG-AGCgUCGGuAGAGGUuc -5' |
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18030 | 3' | -52.9 | NC_004665.1 | + | 34531 | 1.07 | 0.00106 |
Target: 5'- cAACAAACCCUCGCAGCCAUCUCCAAGg -3' miRNA: 3'- -UUGUUUGGGAGCGUCGGUAGAGGUUC- -5' |
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18030 | 3' | -52.9 | NC_004665.1 | + | 36478 | 0.72 | 0.346494 |
Target: 5'- cAAgGAACUCUUGCAG-CAUCUCCGAc -3' miRNA: 3'- -UUgUUUGGGAGCGUCgGUAGAGGUUc -5' |
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18030 | 3' | -52.9 | NC_004665.1 | + | 36549 | 0.69 | 0.518791 |
Target: 5'- cGACAcACCUUCGCuGaucgaCAUCUCCAGc -3' miRNA: 3'- -UUGUuUGGGAGCGuCg----GUAGAGGUUc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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