miRNA: 3'- -CuuAGUAGcUGGACAGGGGuaa-----GGaa -5'
miRNA: 3'- -CUUAGUAGCUGG--ACAGG-----GGuAAGGAa -5'
miRNA: 3'- -CUUAGUAgCUGGa-----CAGGG---GUAAGGAA- -5'
miRNA: 3'- cUUAGUAGcUGGaCAGGGGUAaGGAA- -5'
miRNA: 3'- -CUUAGUAGCUGGACaGGGGUAAGGAA- -5'
Results 1 - 5 of 5 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 18031 | 5' | -51.6 | NC_004665.1 | + | 4066 | 0.66 | 0.773305 |
|
Target: 5'- cGggUCAUCcACCUGUCCCUcgacaucgCCc- -3' miRNA: 3'- -CuuAGUAGcUGGACAGGGGuaa-----GGaa -5' |
|||||||
| 18031 | 5' | -51.6 | NC_004665.1 | + | 28886 | 0.67 | 0.694652 |
|
Target: 5'- gGAAUCGUCGGCCauUGUCUugaagCC-UUCCUg -3' miRNA: 3'- -CUUAGUAGCUGG--ACAGG-----GGuAAGGAa -5' |
|||||||
| 18031 | 5' | -51.6 | NC_004665.1 | + | 15384 | 0.68 | 0.683028 |
|
Target: 5'- gGGAUCAUgGACCacuucgGUCCUgagCGUUCCUUc -3' miRNA: 3'- -CUUAGUAgCUGGa-----CAGGG---GUAAGGAA- -5' |
|||||||
| 18031 | 5' | -51.6 | NC_004665.1 | + | 31893 | 0.7 | 0.508819 |
|
Target: 5'- aAGUUAUCaGCCgGUCCCCAUgCCUUa -3' miRNA: 3'- cUUAGUAGcUGGaCAGGGGUAaGGAA- -5' |
|||||||
| 18031 | 5' | -51.6 | NC_004665.1 | + | 35120 | 0.91 | 0.024392 |
|
Target: 5'- cGAAUCAUCGACCUGcUCCCAUUCCUUc -3' miRNA: 3'- -CUUAGUAGCUGGACaGGGGUAAGGAA- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home