miRNA display CGI


Results 1 - 5 of 5 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18046 3' -54 NC_004680.1 + 50535 0.66 0.788966
Target:  5'- ---cCGAGGAUgcUGUCgACCAGGCggaCUGg -3'
miRNA:   3'- guuuGCUCCUA--GCAG-UGGUCCGa--GGC- -5'
18046 3' -54 NC_004680.1 + 49060 0.67 0.779072
Target:  5'- uCAAGCGcGGugacuucuUCGUCAUCcgccaAGGCUCUGg -3'
miRNA:   3'- -GUUUGCuCCu-------AGCAGUGG-----UCCGAGGC- -5'
18046 3' -54 NC_004680.1 + 8710 0.68 0.71691
Target:  5'- uGAGgGGGGAUCGUCAUgGuGCUgCCGu -3'
miRNA:   3'- gUUUgCUCCUAGCAGUGgUcCGA-GGC- -5'
18046 3' -54 NC_004680.1 + 25937 0.69 0.662699
Target:  5'- ---cCGGGGA---UCACCAgGGCUCCGu -3'
miRNA:   3'- guuuGCUCCUagcAGUGGU-CCGAGGC- -5'
18046 3' -54 NC_004680.1 + 607 0.96 0.012559
Target:  5'- uCAAACGAGGAUCGUCA-CAGGCUCCGg -3'
miRNA:   3'- -GUUUGCUCCUAGCAGUgGUCCGAGGC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.