Results 1 - 20 of 21 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
18047 | 3' | -57.6 | NC_004680.1 | + | 11113 | 0.66 | 0.625935 |
Target: 5'- aCAUCGaCGGGGCcggGgGGCCggcugGCCCg -3' miRNA: 3'- -GUAGUaGCUCUGca-CgCCGGa----CGGGg -5' |
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18047 | 3' | -57.6 | NC_004680.1 | + | 40490 | 0.66 | 0.625935 |
Target: 5'- --aCGUCGuGGCGUGgGGCuCUGCg-- -3' miRNA: 3'- guaGUAGCuCUGCACgCCG-GACGggg -5' |
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18047 | 3' | -57.6 | NC_004680.1 | + | 9779 | 0.66 | 0.611968 |
Target: 5'- uGUCGUCGuuGCcUGUGGCgggccgguuuucguCUGCCCUg -3' miRNA: 3'- gUAGUAGCucUGcACGCCG--------------GACGGGG- -5' |
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18047 | 3' | -57.6 | NC_004680.1 | + | 6050 | 0.66 | 0.593749 |
Target: 5'- uCGUCAaUGGGcGCGUGUGGC-UGCCUg -3' miRNA: 3'- -GUAGUaGCUC-UGCACGCCGgACGGGg -5' |
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18047 | 3' | -57.6 | NC_004680.1 | + | 58648 | 0.67 | 0.572432 |
Target: 5'- aCGUCAUCGuauccGGCGaccGCGGCU--CCCCa -3' miRNA: 3'- -GUAGUAGCu----CUGCa--CGCCGGacGGGG- -5' |
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18047 | 3' | -57.6 | NC_004680.1 | + | 40682 | 0.67 | 0.572432 |
Target: 5'- --aCGUCGAGGCGcGgGGCuCUGCgCa -3' miRNA: 3'- guaGUAGCUCUGCaCgCCG-GACGgGg -5' |
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18047 | 3' | -57.6 | NC_004680.1 | + | 12404 | 0.67 | 0.561839 |
Target: 5'- uGUCGUCuGGuGCGUGgGcGCCUaacccaGCCCCg -3' miRNA: 3'- gUAGUAGcUC-UGCACgC-CGGA------CGGGG- -5' |
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18047 | 3' | -57.6 | NC_004680.1 | + | 42442 | 0.67 | 0.530413 |
Target: 5'- --gCGcCGAGAUc-GUGGCCUGCCCa -3' miRNA: 3'- guaGUaGCUCUGcaCGCCGGACGGGg -5' |
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18047 | 3' | -57.6 | NC_004680.1 | + | 34664 | 0.68 | 0.509821 |
Target: 5'- uCGUCGUUGuuGCGUGCGGagacgaUGCCUa -3' miRNA: 3'- -GUAGUAGCucUGCACGCCgg----ACGGGg -5' |
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18047 | 3' | -57.6 | NC_004680.1 | + | 40658 | 0.68 | 0.479588 |
Target: 5'- --aCGUCGuGGCGUGgGGCuCUGCgCa -3' miRNA: 3'- guaGUAGCuCUGCACgCCG-GACGgGg -5' |
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18047 | 3' | -57.6 | NC_004680.1 | + | 40610 | 0.68 | 0.479588 |
Target: 5'- --aCGUCGuGGCGUGgGGCuCUGCgCa -3' miRNA: 3'- guaGUAGCuCUGCACgCCG-GACGgGg -5' |
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18047 | 3' | -57.6 | NC_004680.1 | + | 40562 | 0.68 | 0.479588 |
Target: 5'- --aCGUCGuGGCGUGgGGCuCUGCgCg -3' miRNA: 3'- guaGUAGCuCUGCACgCCG-GACGgGg -5' |
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18047 | 3' | -57.6 | NC_004680.1 | + | 40436 | 0.69 | 0.440704 |
Target: 5'- --aCAUCGAGuccgaucccgGCGUGCGGC-UGCUUCu -3' miRNA: 3'- guaGUAGCUC----------UGCACGCCGgACGGGG- -5' |
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18047 | 3' | -57.6 | NC_004680.1 | + | 50034 | 0.69 | 0.431264 |
Target: 5'- gCAUCuUCGAGcuggGCGUGCcagaGCCUGCaaCCCg -3' miRNA: 3'- -GUAGuAGCUC----UGCACGc---CGGACG--GGG- -5' |
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18047 | 3' | -57.6 | NC_004680.1 | + | 12692 | 0.69 | 0.431264 |
Target: 5'- --cCAUCGAGuACG-GCGGCCagGUCgCCg -3' miRNA: 3'- guaGUAGCUC-UGCaCGCCGGa-CGG-GG- -5' |
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18047 | 3' | -57.6 | NC_004680.1 | + | 23836 | 0.69 | 0.431264 |
Target: 5'- aCGUgGUCGugguuGACGU-CGGCCUuaucguccaGCCCCu -3' miRNA: 3'- -GUAgUAGCu----CUGCAcGCCGGA---------CGGGG- -5' |
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18047 | 3' | -57.6 | NC_004680.1 | + | 49261 | 0.7 | 0.385911 |
Target: 5'- cCGUCGUCacGGACGUaGCGGUUgGUCCCg -3' miRNA: 3'- -GUAGUAGc-UCUGCA-CGCCGGaCGGGG- -5' |
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18047 | 3' | -57.6 | NC_004680.1 | + | 13049 | 0.72 | 0.305139 |
Target: 5'- gGUgAUaCGcGACGUcGCGGCCUGUUCCg -3' miRNA: 3'- gUAgUA-GCuCUGCA-CGCCGGACGGGG- -5' |
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18047 | 3' | -57.6 | NC_004680.1 | + | 40514 | 0.74 | 0.220398 |
Target: 5'- --aCGUCGAGGCGUGgGGCuCUGCaCgCg -3' miRNA: 3'- guaGUAGCUCUGCACgCCG-GACG-GgG- -5' |
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18047 | 3' | -57.6 | NC_004680.1 | + | 7669 | 0.75 | 0.198687 |
Target: 5'- -uUCAUCGAG-CGUgGCGGCCUGCa-- -3' miRNA: 3'- guAGUAGCUCuGCA-CGCCGGACGggg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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