miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18049 5' -54.1 NC_004680.1 + 5252 0.66 0.785786
Target:  5'- -cGACA-CCGGcguCGAUCUGCUCa--- -3'
miRNA:   3'- caCUGUuGGCCu--GCUAGGCGAGgaau -5'
18049 5' -54.1 NC_004680.1 + 32371 0.66 0.755205
Target:  5'- uUGAaAGCCGGACacuGGUCCGCgCCa-- -3'
miRNA:   3'- cACUgUUGGCCUG---CUAGGCGaGGaau -5'
18049 5' -54.1 NC_004680.1 + 47342 0.67 0.723474
Target:  5'- -gGACAGCCGGACGccCUuaUCCg-- -3'
miRNA:   3'- caCUGUUGGCCUGCuaGGcgAGGaau -5'
18049 5' -54.1 NC_004680.1 + 18828 0.67 0.712696
Target:  5'- -cGACAACgGGAaguUGGaCCGCUCCg-- -3'
miRNA:   3'- caCUGUUGgCCU---GCUaGGCGAGGaau -5'
18049 5' -54.1 NC_004680.1 + 5184 0.67 0.711614
Target:  5'- uUGGCGAaaacgguCUGGGCGGUCCaCUCCUc- -3'
miRNA:   3'- cACUGUU-------GGCCUGCUAGGcGAGGAau -5'
18049 5' -54.1 NC_004680.1 + 51601 0.68 0.679924
Target:  5'- -cGGCGugCGccuuGGCGAUCCGCUCa--- -3'
miRNA:   3'- caCUGUugGC----CUGCUAGGCGAGgaau -5'
18049 5' -54.1 NC_004680.1 + 47794 0.69 0.624522
Target:  5'- -cGGCAA-CGGACGAaacCCGCUCCc-- -3'
miRNA:   3'- caCUGUUgGCCUGCUa--GGCGAGGaau -5'
18049 5' -54.1 NC_004680.1 + 49931 0.69 0.591277
Target:  5'- uGUGAUuuCCGcGACGGUUCGCUCg--- -3'
miRNA:   3'- -CACUGuuGGC-CUGCUAGGCGAGgaau -5'
18049 5' -54.1 NC_004680.1 + 30873 0.69 0.580254
Target:  5'- -cGGucGCCGG-UGAUCCGCUCCa-- -3'
miRNA:   3'- caCUguUGGCCuGCUAGGCGAGGaau -5'
18049 5' -54.1 NC_004680.1 + 51209 0.7 0.53668
Target:  5'- --cGCAGCCGGuCGAaaUCCGUUCCg-- -3'
miRNA:   3'- cacUGUUGGCCuGCU--AGGCGAGGaau -5'
18049 5' -54.1 NC_004680.1 + 42574 0.7 0.515312
Target:  5'- -cGACAACgccACGAUCCGCUCCa-- -3'
miRNA:   3'- caCUGUUGgccUGCUAGGCGAGGaau -5'
18049 5' -54.1 NC_004680.1 + 48390 0.72 0.430896
Target:  5'- gGUGACGAUguuuguaucgagcgCGGAUGAUCCGCgugUCCUg- -3'
miRNA:   3'- -CACUGUUG--------------GCCUGCUAGGCG---AGGAau -5'
18049 5' -54.1 NC_004680.1 + 1119 1.06 0.00213
Target:  5'- gGUGACAACCGGACGAUCCGCUCCUUAc -3'
miRNA:   3'- -CACUGUUGGCCUGCUAGGCGAGGAAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.