Results 41 - 46 of 46 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 18050 | 5' | -50.9 | NC_004680.1 | + | 40813 | 0.71 | 0.685504 |
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Target: 5'- gACGCgUugCGAaugCAGAUGGAC-CGCa -3' miRNA: 3'- aUGCG-GugGCUaa-GUCUAUCUGuGCG- -5' |
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| 18050 | 5' | -50.9 | NC_004680.1 | + | 42089 | 0.72 | 0.629095 |
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Target: 5'- -gUGCCGCCGGgcgCAGAgguGGgGCGCa -3' miRNA: 3'- auGCGGUGGCUaa-GUCUau-CUgUGCG- -5' |
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| 18050 | 5' | -50.9 | NC_004680.1 | + | 19722 | 0.72 | 0.606473 |
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Target: 5'- gUACGCCACCuGGUggagCGGGUaacggcgguaaGGGCGCGUu -3' miRNA: 3'- -AUGCGGUGG-CUAa---GUCUA-----------UCUGUGCG- -5' |
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| 18050 | 5' | -50.9 | NC_004680.1 | + | 48891 | 0.72 | 0.606473 |
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Target: 5'- cUGCGCCACCacuUUCcGAUgcugGGACGCGUg -3' miRNA: 3'- -AUGCGGUGGcu-AAGuCUA----UCUGUGCG- -5' |
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| 18050 | 5' | -50.9 | NC_004680.1 | + | 16255 | 0.73 | 0.550491 |
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Target: 5'- gUACGgCGCCGAggcugUCGGAUAGAacCGCu -3' miRNA: 3'- -AUGCgGUGGCUa----AGUCUAUCUguGCG- -5' |
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| 18050 | 5' | -50.9 | NC_004680.1 | + | 1601 | 0.97 | 0.019122 |
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Target: 5'- uUACGCCACCGA-UUAGAUAGACACGCu -3' miRNA: 3'- -AUGCGGUGGCUaAGUCUAUCUGUGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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