miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18051 3' -53.8 NC_004680.1 + 12034 0.66 0.837214
Target:  5'- uGCCCGaUgGCuuugUUCGG-GACCAUGAu -3'
miRNA:   3'- -CGGGC-AgCGuua-GAGUCaCUGGUGCU- -5'
18051 3' -53.8 NC_004680.1 + 54527 0.66 0.828281
Target:  5'- uGCUCGUCGguGgcuUCAGguuCCACGAa -3'
miRNA:   3'- -CGGGCAGCguUag-AGUCacuGGUGCU- -5'
18051 3' -53.8 NC_004680.1 + 1715 0.67 0.790589
Target:  5'- -gCCGUCGC-AUCUCucc-ACCGCGAc -3'
miRNA:   3'- cgGGCAGCGuUAGAGucacUGGUGCU- -5'
18051 3' -53.8 NC_004680.1 + 19178 0.67 0.778737
Target:  5'- aGCCCGcCGUcGUCgauugugaaggcgUCGGUGACCcgcucggGCGAu -3'
miRNA:   3'- -CGGGCaGCGuUAG-------------AGUCACUGG-------UGCU- -5'
18051 3' -53.8 NC_004680.1 + 11535 0.67 0.760556
Target:  5'- cGCCCG-CGCAuccgacaugcgcAUCUCGGcGGCC-UGAa -3'
miRNA:   3'- -CGGGCaGCGU------------UAGAGUCaCUGGuGCU- -5'
18051 3' -53.8 NC_004680.1 + 20528 0.67 0.750268
Target:  5'- gGCCCaUCGUGAUCgCGGUGccguucgggauGCCugGAa -3'
miRNA:   3'- -CGGGcAGCGUUAGaGUCAC-----------UGGugCU- -5'
18051 3' -53.8 NC_004680.1 + 23297 0.68 0.73986
Target:  5'- uGUCCGguucggggGCGAgcaUCUCGGUGacGCCGCGAa -3'
miRNA:   3'- -CGGGCag------CGUU---AGAGUCAC--UGGUGCU- -5'
18051 3' -53.8 NC_004680.1 + 49073 0.68 0.697259
Target:  5'- uGCCuCGUCGUAGUCaagcgCGGUGACUucuuCGu -3'
miRNA:   3'- -CGG-GCAGCGUUAGa----GUCACUGGu---GCu -5'
18051 3' -53.8 NC_004680.1 + 43715 0.69 0.664607
Target:  5'- -aCCGUUGCAGUUcCuG-GACCGCGAa -3'
miRNA:   3'- cgGGCAGCGUUAGaGuCaCUGGUGCU- -5'
18051 3' -53.8 NC_004680.1 + 4297 0.69 0.64267
Target:  5'- cGUCCGcCGCGGUCUgCGaUGuCCGCGAa -3'
miRNA:   3'- -CGGGCaGCGUUAGA-GUcACuGGUGCU- -5'
18051 3' -53.8 NC_004680.1 + 17950 0.7 0.620694
Target:  5'- aCCCGUCGCAuUCUCcAGcGGCgAUGGu -3'
miRNA:   3'- cGGGCAGCGUuAGAG-UCaCUGgUGCU- -5'
18051 3' -53.8 NC_004680.1 + 38026 0.7 0.598758
Target:  5'- cGCCCGcagaCGCucaacCUCAGUGACCaguucgGCGAc -3'
miRNA:   3'- -CGGGCa---GCGuua--GAGUCACUGG------UGCU- -5'
18051 3' -53.8 NC_004680.1 + 51668 0.72 0.502376
Target:  5'- gGUCCG-CGCAuacCUCGGUGAUgCACGAa -3'
miRNA:   3'- -CGGGCaGCGUua-GAGUCACUG-GUGCU- -5'
18051 3' -53.8 NC_004680.1 + 1744 1.11 0.001315
Target:  5'- gGCCCGUCGCAAUCUCAGUGACCACGAc -3'
miRNA:   3'- -CGGGCAGCGUUAGAGUCACUGGUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.