miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18051 5' -54.2 NC_004680.1 + 33641 0.66 0.813042
Target:  5'- --gUUCcCCACgGCGggcGCCCGUCAGGa -3'
miRNA:   3'- guaGAGaGGUGgCGC---UGGGCAGUUUg -5'
18051 5' -54.2 NC_004680.1 + 45913 0.66 0.803557
Target:  5'- ----aCUCCACCGUcACCgcCGUCAAAUa -3'
miRNA:   3'- guagaGAGGUGGCGcUGG--GCAGUUUG- -5'
18051 5' -54.2 NC_004680.1 + 33108 0.66 0.793891
Target:  5'- ----aCUCCGCCGCGA--CGUCGAAg -3'
miRNA:   3'- guagaGAGGUGGCGCUggGCAGUUUg -5'
18051 5' -54.2 NC_004680.1 + 2280 0.66 0.793891
Target:  5'- -cUgUCUCUAUCGCGACuaguagauCCGUCuAGGCg -3'
miRNA:   3'- guAgAGAGGUGGCGCUG--------GGCAG-UUUG- -5'
18051 5' -54.2 NC_004680.1 + 1547 0.66 0.774063
Target:  5'- gGUCguagUCCuuCGCGAUCCGcUCAAACu -3'
miRNA:   3'- gUAGag--AGGugGCGCUGGGC-AGUUUG- -5'
18051 5' -54.2 NC_004680.1 + 48459 0.66 0.763923
Target:  5'- aCAUCg--UCACCGCGACUccuCGUgGAACc -3'
miRNA:   3'- -GUAGagaGGUGGCGCUGG---GCAgUUUG- -5'
18051 5' -54.2 NC_004680.1 + 3814 0.67 0.732735
Target:  5'- gGUCUCcaagaUUCGCgGUGugCCGUCGGAg -3'
miRNA:   3'- gUAGAG-----AGGUGgCGCugGGCAGUUUg -5'
18051 5' -54.2 NC_004680.1 + 52755 0.68 0.700636
Target:  5'- uCAUCggacacgCUCCGCuugCGCGuACCCG-CGAGCu -3'
miRNA:   3'- -GUAGa------GAGGUG---GCGC-UGGGCaGUUUG- -5'
18051 5' -54.2 NC_004680.1 + 44938 0.68 0.689788
Target:  5'- --aCUCcgCCACCGUGGggacacgcgcCCCGUCcGACa -3'
miRNA:   3'- guaGAGa-GGUGGCGCU----------GGGCAGuUUG- -5'
18051 5' -54.2 NC_004680.1 + 9363 0.69 0.63493
Target:  5'- gAUCUCguuguacguuUCCGCCGCGAucaacUCCGacUCAGACc -3'
miRNA:   3'- gUAGAG----------AGGUGGCGCU-----GGGC--AGUUUG- -5'
18051 5' -54.2 NC_004680.1 + 11795 0.69 0.62391
Target:  5'- aCcgCUCUCC-CCGgGGCgCCGUCu-GCa -3'
miRNA:   3'- -GuaGAGAGGuGGCgCUG-GGCAGuuUG- -5'
18051 5' -54.2 NC_004680.1 + 16385 0.7 0.558262
Target:  5'- aCAUCaaUCCGCCGCGAaaaaCGUCAcGCc -3'
miRNA:   3'- -GUAGagAGGUGGCGCUgg--GCAGUuUG- -5'
18051 5' -54.2 NC_004680.1 + 25791 0.7 0.536765
Target:  5'- --cCUgCUCCGCCGgGGCCUGUggcgCAGGCg -3'
miRNA:   3'- guaGA-GAGGUGGCgCUGGGCA----GUUUG- -5'
18051 5' -54.2 NC_004680.1 + 38352 0.73 0.415586
Target:  5'- uGUCcCUCuCGCCGCuGCCCGUgAGGCg -3'
miRNA:   3'- gUAGaGAG-GUGGCGcUGGGCAgUUUG- -5'
18051 5' -54.2 NC_004680.1 + 1709 1.08 0.001606
Target:  5'- gCAUCUCUCCACCGCGACCCGUCAAACc -3'
miRNA:   3'- -GUAGAGAGGUGGCGCUGGGCAGUUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.