Results 1 - 20 of 35 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18052 | 3' | -63.2 | NC_004680.1 | + | 826 | 0.67 | 0.354369 |
Target: 5'- aCGGCCagccaaacggUGCCCACGCGGauacaGcUCGUa- -3' miRNA: 3'- gGCCGG----------GCGGGUGCGCCg----CuAGCAgc -5' |
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18052 | 3' | -63.2 | NC_004680.1 | + | 1915 | 1.1 | 0.00022 |
Target: 5'- aCCGGCCCGCCCACGCGGCGAUCGUCGa -3' miRNA: 3'- -GGCCGGGCGGGUGCGCCGCUAGCAGC- -5' |
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18052 | 3' | -63.2 | NC_004680.1 | + | 7369 | 0.66 | 0.39502 |
Target: 5'- cUCGGCCUcauucucagcgGCCUcaucagACGCGGCGAaCGUg- -3' miRNA: 3'- -GGCCGGG-----------CGGG------UGCGCCGCUaGCAgc -5' |
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18052 | 3' | -63.2 | NC_004680.1 | + | 7528 | 0.69 | 0.239014 |
Target: 5'- gCGGCCCacauGCCgCACcaaGUGGCcGUCGUCGu -3' miRNA: 3'- gGCCGGG----CGG-GUG---CGCCGcUAGCAGC- -5' |
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18052 | 3' | -63.2 | NC_004680.1 | + | 8315 | 0.68 | 0.275705 |
Target: 5'- gCGGCCCGaCCCG-GCGGgaaCGAUCGcCc -3' miRNA: 3'- gGCCGGGC-GGGUgCGCC---GCUAGCaGc -5' |
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18052 | 3' | -63.2 | NC_004680.1 | + | 8638 | 0.66 | 0.412103 |
Target: 5'- gUGGCCUGUucaCGCGCGGCGGcaccaUUGUUc -3' miRNA: 3'- gGCCGGGCGg--GUGCGCCGCU-----AGCAGc -5' |
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18052 | 3' | -63.2 | NC_004680.1 | + | 9806 | 0.67 | 0.359089 |
Target: 5'- cCCGGCCCGCCgAcacaccauucgcCGCGaacccauccacaauGCGAgaacccgcagccuUCGUCGc -3' miRNA: 3'- -GGCCGGGCGGgU------------GCGC--------------CGCU-------------AGCAGC- -5' |
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18052 | 3' | -63.2 | NC_004680.1 | + | 11097 | 0.71 | 0.196537 |
Target: 5'- gCGGCCCcggcGCCCAagcagaacgcCGCGGCcguUCGUCa -3' miRNA: 3'- gGCCGGG----CGGGU----------GCGCCGcu-AGCAGc -5' |
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18052 | 3' | -63.2 | NC_004680.1 | + | 12269 | 0.71 | 0.173461 |
Target: 5'- aCUGGCCCGCCCAa--GGCGcuggUGUUGg -3' miRNA: 3'- -GGCCGGGCGGGUgcgCCGCua--GCAGC- -5' |
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18052 | 3' | -63.2 | NC_004680.1 | + | 12412 | 0.68 | 0.316761 |
Target: 5'- cCCGGCgCGgcaCCCgaaGCGGCGGUCGcCc -3' miRNA: 3'- -GGCCGgGC---GGGug-CGCCGCUAGCaGc -5' |
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18052 | 3' | -63.2 | NC_004680.1 | + | 14695 | 0.71 | 0.196537 |
Target: 5'- gCCGGUUCGCCaggcgacuuCGCGGgGAUCGcCGc -3' miRNA: 3'- -GGCCGGGCGGgu-------GCGCCgCUAGCaGC- -5' |
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18052 | 3' | -63.2 | NC_004680.1 | + | 16141 | 0.69 | 0.239014 |
Target: 5'- uUGGCCCGUaCCAUcCGGCGAUUGagCGg -3' miRNA: 3'- gGCCGGGCG-GGUGcGCCGCUAGCa-GC- -5' |
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18052 | 3' | -63.2 | NC_004680.1 | + | 17238 | 0.66 | 0.37595 |
Target: 5'- gCGGCUgaUCCugGUGGCGGgaccugcggcggguUCGUCGg -3' miRNA: 3'- gGCCGGgcGGGugCGCCGCU--------------AGCAGC- -5' |
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18052 | 3' | -63.2 | NC_004680.1 | + | 21444 | 0.67 | 0.346602 |
Target: 5'- gCCGGCgCCGCCaUACGUGGcCGA-CGg-- -3' miRNA: 3'- -GGCCG-GGCGG-GUGCGCC-GCUaGCagc -5' |
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18052 | 3' | -63.2 | NC_004680.1 | + | 22225 | 0.67 | 0.362259 |
Target: 5'- aCCGGgagaCUGCgCGCGCGGCG-UCGg-- -3' miRNA: 3'- -GGCCg---GGCGgGUGCGCCGCuAGCagc -5' |
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18052 | 3' | -63.2 | NC_004680.1 | + | 22772 | 0.68 | 0.288227 |
Target: 5'- gUCGGCguCCGCCCcgggagaAgGCGGCcgaGUCGUCGu -3' miRNA: 3'- -GGCCG--GGCGGG-------UgCGCCGc--UAGCAGC- -5' |
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18052 | 3' | -63.2 | NC_004680.1 | + | 25409 | 0.66 | 0.378402 |
Target: 5'- gCGGCCCucGUCUACGaGGCGAUgacUGUCc -3' miRNA: 3'- gGCCGGG--CGGGUGCgCCGCUA---GCAGc -5' |
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18052 | 3' | -63.2 | NC_004680.1 | + | 27112 | 0.67 | 0.354369 |
Target: 5'- gCCGGCCaaCCugggguugUugGCGGCGcgccuguaGUCGUCGg -3' miRNA: 3'- -GGCCGGgcGG--------GugCGCCGC--------UAGCAGC- -5' |
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18052 | 3' | -63.2 | NC_004680.1 | + | 27178 | 0.69 | 0.26929 |
Target: 5'- aCCGGCCCGCCUauaACGaguuucCGAUCugGUCGg -3' miRNA: 3'- -GGCCGGGCGGG---UGCgcc---GCUAG--CAGC- -5' |
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18052 | 3' | -63.2 | NC_004680.1 | + | 27599 | 0.71 | 0.173461 |
Target: 5'- uCCuGCaCCGCCagaUAUGCGGCGA-CGUCGa -3' miRNA: 3'- -GGcCG-GGCGG---GUGCGCCGCUaGCAGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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