Results 21 - 35 of 35 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18052 | 3' | -63.2 | NC_004680.1 | + | 12412 | 0.68 | 0.316761 |
Target: 5'- cCCGGCgCGgcaCCCgaaGCGGCGGUCGcCc -3' miRNA: 3'- -GGCCGgGC---GGGug-CGCCGCUAGCaGc -5' |
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18052 | 3' | -63.2 | NC_004680.1 | + | 36016 | 0.69 | 0.239014 |
Target: 5'- aCCGGCCgaGgCCACGCGcGCGuuUCGcCGc -3' miRNA: 3'- -GGCCGGg-CgGGUGCGC-CGCu-AGCaGC- -5' |
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18052 | 3' | -63.2 | NC_004680.1 | + | 16141 | 0.69 | 0.239014 |
Target: 5'- uUGGCCCGUaCCAUcCGGCGAUUGagCGg -3' miRNA: 3'- gGCCGGGCG-GGUGcGCCGCUAGCa-GC- -5' |
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18052 | 3' | -63.2 | NC_004680.1 | + | 27178 | 0.69 | 0.26929 |
Target: 5'- aCCGGCCCGCCUauaACGaguuucCGAUCugGUCGg -3' miRNA: 3'- -GGCCGGGCGGG---UGCgcc---GCUAG--CAGC- -5' |
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18052 | 3' | -63.2 | NC_004680.1 | + | 7528 | 0.69 | 0.239014 |
Target: 5'- gCGGCCCacauGCCgCACcaaGUGGCcGUCGUCGu -3' miRNA: 3'- gGCCGGG----CGG-GUG---CGCCGcUAGCAGC- -5' |
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18052 | 3' | -63.2 | NC_004680.1 | + | 53184 | 0.7 | 0.222249 |
Target: 5'- -aGGCUguCCCACGCGGCGAUCcaCGc -3' miRNA: 3'- ggCCGGgcGGGUGCGCCGCUAGcaGC- -5' |
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18052 | 3' | -63.2 | NC_004680.1 | + | 14695 | 0.71 | 0.196537 |
Target: 5'- gCCGGUUCGCCaggcgacuuCGCGGgGAUCGcCGc -3' miRNA: 3'- -GGCCGGGCGGgu-------GCGCCgCUAGCaGC- -5' |
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18052 | 3' | -63.2 | NC_004680.1 | + | 27599 | 0.71 | 0.173461 |
Target: 5'- uCCuGCaCCGCCagaUAUGCGGCGA-CGUCGa -3' miRNA: 3'- -GGcCG-GGCGG---GUGCGCCGCUaGCAGC- -5' |
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18052 | 3' | -63.2 | NC_004680.1 | + | 12269 | 0.71 | 0.173461 |
Target: 5'- aCUGGCCCGCCCAa--GGCGcuggUGUUGg -3' miRNA: 3'- -GGCCGGGCGGGUgcgCCGCua--GCAGC- -5' |
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18052 | 3' | -63.2 | NC_004680.1 | + | 11097 | 0.71 | 0.196537 |
Target: 5'- gCGGCCCcggcGCCCAagcagaacgcCGCGGCcguUCGUCa -3' miRNA: 3'- gGCCGGG----CGGGU----------GCGCCGcu-AGCAGc -5' |
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18052 | 3' | -63.2 | NC_004680.1 | + | 58510 | 0.74 | 0.124425 |
Target: 5'- gUGGCgUGCCCAUGUGGUGAuugcuUCGUCu -3' miRNA: 3'- gGCCGgGCGGGUGCGCCGCU-----AGCAGc -5' |
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18052 | 3' | -63.2 | NC_004680.1 | + | 43622 | 0.75 | 0.100716 |
Target: 5'- cCCGG-CCGCCCuggucgaACGUGGCGG-CGUCGc -3' miRNA: 3'- -GGCCgGGCGGG-------UGCGCCGCUaGCAGC- -5' |
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18052 | 3' | -63.2 | NC_004680.1 | + | 32384 | 0.75 | 0.098361 |
Target: 5'- aCUGGUCCGCgCCAuuucgUGCGGCcGUCGUCGc -3' miRNA: 3'- -GGCCGGGCG-GGU-----GCGCCGcUAGCAGC- -5' |
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18052 | 3' | -63.2 | NC_004680.1 | + | 29094 | 0.77 | 0.071557 |
Target: 5'- aCCGcGCCCGCgCCGagUGUGGCGAUCG-CGg -3' miRNA: 3'- -GGC-CGGGCG-GGU--GCGCCGCUAGCaGC- -5' |
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18052 | 3' | -63.2 | NC_004680.1 | + | 1915 | 1.1 | 0.00022 |
Target: 5'- aCCGGCCCGCCCACGCGGCGAUCGUCGa -3' miRNA: 3'- -GGCCGGGCGGGUGCGCCGCUAGCAGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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