miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18053 5' -52.7 NC_004680.1 + 48953 0.66 0.837773
Target:  5'- aCACCA-UCGCCAGaGCcUUGGCGg-- -3'
miRNA:   3'- -GUGGUcAGCGGUUaCGuAGCCGUauu -5'
18053 5' -52.7 NC_004680.1 + 25748 0.66 0.837773
Target:  5'- gGCCGGU-GCCGGUGCcgUGGUu--- -3'
miRNA:   3'- gUGGUCAgCGGUUACGuaGCCGuauu -5'
18053 5' -52.7 NC_004680.1 + 11761 0.66 0.819056
Target:  5'- uUACCcGUCuGCCGGUGCGgcCGGUGUGu -3'
miRNA:   3'- -GUGGuCAG-CGGUUACGUa-GCCGUAUu -5'
18053 5' -52.7 NC_004680.1 + 23127 0.66 0.809377
Target:  5'- -uCCAGUCGCCAAgag--CGGCGa-- -3'
miRNA:   3'- guGGUCAGCGGUUacguaGCCGUauu -5'
18053 5' -52.7 NC_004680.1 + 17135 0.66 0.799499
Target:  5'- uCACCGGUgagggaGCCGAUGU-UCGGguUGAu -3'
miRNA:   3'- -GUGGUCAg-----CGGUUACGuAGCCguAUU- -5'
18053 5' -52.7 NC_004680.1 + 27731 0.67 0.758233
Target:  5'- aACCAGUCaCCAA--CAUCGGUGUGGg -3'
miRNA:   3'- gUGGUCAGcGGUUacGUAGCCGUAUU- -5'
18053 5' -52.7 NC_004680.1 + 41737 0.67 0.74754
Target:  5'- aCGCCAGUCGCUggUGUggacuucugccaGUUGG-AUGAa -3'
miRNA:   3'- -GUGGUCAGCGGuuACG------------UAGCCgUAUU- -5'
18053 5' -52.7 NC_004680.1 + 13948 0.68 0.725791
Target:  5'- -cCCAGUCGCCGuUGCugucgCGGCc--- -3'
miRNA:   3'- guGGUCAGCGGUuACGua---GCCGuauu -5'
18053 5' -52.7 NC_004680.1 + 17390 0.68 0.714761
Target:  5'- aCACCGaaaauagaucGUCGCCGGUGUAcCGGCc--- -3'
miRNA:   3'- -GUGGU----------CAGCGGUUACGUaGCCGuauu -5'
18053 5' -52.7 NC_004680.1 + 29218 0.68 0.689079
Target:  5'- -uCUAGUCGCCGAagccguuccgggguUGCcgCGGCGUu- -3'
miRNA:   3'- guGGUCAGCGGUU--------------ACGuaGCCGUAuu -5'
18053 5' -52.7 NC_004680.1 + 29606 0.68 0.685704
Target:  5'- uCACCGGUCGCgucgcuugucgccuuCGAUGCGUUcgaGGCGUu- -3'
miRNA:   3'- -GUGGUCAGCG---------------GUUACGUAG---CCGUAuu -5'
18053 5' -52.7 NC_004680.1 + 49319 0.68 0.681195
Target:  5'- gCACUGGUCGCUc-UGCGUaugUGGCGUGAa -3'
miRNA:   3'- -GUGGUCAGCGGuuACGUA---GCCGUAUU- -5'
18053 5' -52.7 NC_004680.1 + 24041 0.69 0.658547
Target:  5'- uGCCGGUCGaugguUCGGUGaCGUCGGCGa-- -3'
miRNA:   3'- gUGGUCAGC-----GGUUAC-GUAGCCGUauu -5'
18053 5' -52.7 NC_004680.1 + 1923 0.69 0.624406
Target:  5'- aCGCagGGUuaUGCCGAUGCAUUGGCGa-- -3'
miRNA:   3'- -GUGg-UCA--GCGGUUACGUAGCCGUauu -5'
18053 5' -52.7 NC_004680.1 + 36930 0.69 0.624406
Target:  5'- cCugCAGUUGCCGcgcgaacugcgAUGCGgugaccCGGCAUGAa -3'
miRNA:   3'- -GugGUCAGCGGU-----------UACGUa-----GCCGUAUU- -5'
18053 5' -52.7 NC_004680.1 + 26786 0.7 0.613026
Target:  5'- cCACCgaGGUCGgCAccgGCAUCGGCGa-- -3'
miRNA:   3'- -GUGG--UCAGCgGUua-CGUAGCCGUauu -5'
18053 5' -52.7 NC_004680.1 + 42764 0.71 0.523425
Target:  5'- cCACC-GUCGCCGcgGCAUCcGUGUAGg -3'
miRNA:   3'- -GUGGuCAGCGGUuaCGUAGcCGUAUU- -5'
18053 5' -52.7 NC_004680.1 + 58771 0.76 0.282079
Target:  5'- gCACCuc-CGCCAGUGCAUUGGUGUAGc -3'
miRNA:   3'- -GUGGucaGCGGUUACGUAGCCGUAUU- -5'
18053 5' -52.7 NC_004680.1 + 2015 1.05 0.002728
Target:  5'- uCACCAGUCGCCAAUGCAUCGGCAUAAc -3'
miRNA:   3'- -GUGGUCAGCGGUUACGUAGCCGUAUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.