miRNA display CGI

Results 1 - 8 of 8 are showing below:
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ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
18055	5'	-52.6	NC_004680.1	+	42642	0.66	0.823514
	Target:  5'- cCUGGCCCAgGC--GGCCCGcCUGCUc- -3' miRNA:   3'- -GGUCGGGUaUGaaCUGGGU-GACGAau -5'
18055	5'	-52.6	NC_004680.1	+	13929	0.67	0.784277
	Target:  5'- gCGGCCCAUGCgc-GCCCACagGUc-- -3' miRNA:   3'- gGUCGGGUAUGaacUGGGUGa-CGaau -5'
18055	5'	-52.6	NC_004680.1	+	15712	0.67	0.76361
	Target:  5'- aCUGGCCCgacgaaaacgGUGCUUGAUUCGgUGCUg- -3' miRNA:   3'- -GGUCGGG----------UAUGAACUGGGUgACGAau -5'
18055	5'	-52.6	NC_004680.1	+	21333	0.69	0.698585
	Target:  5'- aCCAGCCCcgGCc-GACgaCACUGCa-- -3' miRNA:   3'- -GGUCGGGuaUGaaCUGg-GUGACGaau -5'
18055	5'	-52.6	NC_004680.1	+	34232	0.69	0.676233
	Target:  5'- cCCGGUCCGcaUGCgcauaGAUCCGCUGCg-- -3' miRNA:   3'- -GGUCGGGU--AUGaa---CUGGGUGACGaau -5'
18055	5'	-52.6	NC_004680.1	+	11151	0.69	0.642403
	Target:  5'- gCAGCCC-UGCgggUGACCCGauuCUGCc-- -3' miRNA:   3'- gGUCGGGuAUGa--ACUGGGU---GACGaau -5'
18055	5'	-52.6	NC_004680.1	+	35099	0.7	0.585958
	Target:  5'- gCCGGCCCGaGgUUGGCUCgGCUGCg-- -3' miRNA:   3'- -GGUCGGGUaUgAACUGGG-UGACGaau -5'
18055	5'	-52.6	NC_004680.1	+	2629	1.08	0.001879
	Target:  5'- uCCAGCCCAUACUUGACCCACUGCUUAc -3' miRNA:   3'- -GGUCGGGUAUGAACUGGGUGACGAAU- -5'

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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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