Results 81 - 100 of 112 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
18057 | 5' | -60.4 | NC_004680.1 | + | 12466 | 0.7 | 0.289537 |
Target: 5'- gACACCGgaGCCGGaccCGGCaGUGGACCc -3' miRNA: 3'- aUGUGGUggUGGCC---GCCGcCGCUUGG- -5' |
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18057 | 5' | -60.4 | NC_004680.1 | + | 12163 | 0.7 | 0.262664 |
Target: 5'- gGCGCUGCCGCCcaGGUauccguuccgacGGUGGCGGuaGCCg -3' miRNA: 3'- aUGUGGUGGUGG--CCG------------CCGCCGCU--UGG- -5' |
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18057 | 5' | -60.4 | NC_004680.1 | + | 27829 | 0.7 | 0.275839 |
Target: 5'- gUugGCCGCagcucggcgGCCGGaCGGUGGUGGACg -3' miRNA: 3'- -AugUGGUGg--------UGGCC-GCCGCCGCUUGg -5' |
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18057 | 5' | -60.4 | NC_004680.1 | + | 2687 | 0.7 | 0.269186 |
Target: 5'- aGguCCGCUAUgCGGUGGUGGCgGGACCu -3' miRNA: 3'- aUguGGUGGUG-GCCGCCGCCG-CUUGG- -5' |
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18057 | 5' | -60.4 | NC_004680.1 | + | 47840 | 0.7 | 0.262664 |
Target: 5'- aGCGCCG--GCUGGCuGCGGCGGuugGCCg -3' miRNA: 3'- aUGUGGUggUGGCCGcCGCCGCU---UGG- -5' |
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18057 | 5' | -60.4 | NC_004680.1 | + | 45873 | 0.7 | 0.262664 |
Target: 5'- cUACAUCGUCACCGGUGGaacCGAACCa -3' miRNA: 3'- -AUGUGGUGGUGGCCGCCgccGCUUGG- -5' |
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18057 | 5' | -60.4 | NC_004680.1 | + | 27919 | 0.71 | 0.231965 |
Target: 5'- -cCACCACCGuCCGGCcgccgagcuGCGGCcAACCa -3' miRNA: 3'- auGUGGUGGU-GGCCGc--------CGCCGcUUGG- -5' |
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18057 | 5' | -60.4 | NC_004680.1 | + | 26891 | 0.71 | 0.249385 |
Target: 5'- gGCACCACCACUuGCGGUcaucgccgaugccGGUGccGACCu -3' miRNA: 3'- aUGUGGUGGUGGcCGCCG-------------CCGC--UUGG- -5' |
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18057 | 5' | -60.4 | NC_004680.1 | + | 57930 | 0.71 | 0.218888 |
Target: 5'- aGCGCCuccACCACCGGauaGGUGGUagagguggaagccgGGGCCg -3' miRNA: 3'- aUGUGG---UGGUGGCCg--CCGCCG--------------CUUGG- -5' |
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18057 | 5' | -60.4 | NC_004680.1 | + | 18206 | 0.71 | 0.2262 |
Target: 5'- gGCACCACCugcaACCGGau-CGGCGcGCCg -3' miRNA: 3'- aUGUGGUGG----UGGCCgccGCCGCuUGG- -5' |
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18057 | 5' | -60.4 | NC_004680.1 | + | 41281 | 0.71 | 0.2262 |
Target: 5'- aUGCACCAacaaCAUUGGCGGUauuGGUGGACg -3' miRNA: 3'- -AUGUGGUg---GUGGCCGCCG---CCGCUUGg -5' |
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18057 | 5' | -60.4 | NC_004680.1 | + | 19601 | 0.71 | 0.220557 |
Target: 5'- ---gUUACCACCGGCGGCGccgucaccCGGGCCa -3' miRNA: 3'- auguGGUGGUGGCCGCCGCc-------GCUUGG- -5' |
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18057 | 5' | -60.4 | NC_004680.1 | + | 24217 | 0.71 | 0.243866 |
Target: 5'- gGCACCACCcuucccggcACCGGCa-CGGCGggUg -3' miRNA: 3'- aUGUGGUGG---------UGGCCGccGCCGCuuGg -5' |
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18057 | 5' | -60.4 | NC_004680.1 | + | 49388 | 0.71 | 0.237259 |
Target: 5'- aGCGCCGuuGCuUGGCugcgauuGGCGGCGGAUCg -3' miRNA: 3'- aUGUGGUggUG-GCCG-------CCGCCGCUUGG- -5' |
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18057 | 5' | -60.4 | NC_004680.1 | + | 43367 | 0.72 | 0.188688 |
Target: 5'- cACACCAaguaCugcucugauucguGCCGGCaGGCGGCGAuCCu -3' miRNA: 3'- aUGUGGUg---G-------------UGGCCG-CCGCCGCUuGG- -5' |
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18057 | 5' | -60.4 | NC_004680.1 | + | 56470 | 0.72 | 0.209631 |
Target: 5'- cUGCGCCGCUGuuGGUGGCGucgaggagcGCGGACa -3' miRNA: 3'- -AUGUGGUGGUggCCGCCGC---------CGCUUGg -5' |
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18057 | 5' | -60.4 | NC_004680.1 | + | 10306 | 0.72 | 0.209631 |
Target: 5'- cAUGCUgACCuuGCCGGUGGCGGCGAuuuGCa -3' miRNA: 3'- aUGUGG-UGG--UGGCCGCCGCCGCU---UGg -5' |
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18057 | 5' | -60.4 | NC_004680.1 | + | 21575 | 0.72 | 0.188688 |
Target: 5'- cGCACuCACCcagcccggGCCGGUGGCcucaucuGGCGAGCa -3' miRNA: 3'- aUGUG-GUGG--------UGGCCGCCG-------CCGCUUGg -5' |
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18057 | 5' | -60.4 | NC_004680.1 | + | 24939 | 0.73 | 0.170497 |
Target: 5'- aGCACCAuCUACuCGGUggcaaaGGCGGCGAugugACCg -3' miRNA: 3'- aUGUGGU-GGUG-GCCG------CCGCCGCU----UGG- -5' |
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18057 | 5' | -60.4 | NC_004680.1 | + | 40887 | 0.73 | 0.179621 |
Target: 5'- gUGgACCACCGCCcGCGGC-GUGGACUa -3' miRNA: 3'- -AUgUGGUGGUGGcCGCCGcCGCUUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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