miRNA display CGI


Results 61 - 80 of 112 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18057 5' -60.4 NC_004680.1 + 5210 0.68 0.365148
Target:  5'- cUACAagGCCGCUGGcCGGCagaccucGGCGGACg -3'
miRNA:   3'- -AUGUggUGGUGGCC-GCCG-------CCGCUUGg -5'
18057 5' -60.4 NC_004680.1 + 25815 0.68 0.365978
Target:  5'- gUGCGuuCgGCaCugCGGCGGCGGCc-GCCa -3'
miRNA:   3'- -AUGU--GgUG-GugGCCGCCGCCGcuUGG- -5'
18057 5' -60.4 NC_004680.1 + 39534 0.68 0.365978
Target:  5'- -uUugCAUCGCCgGGCGGCuGCGggUg -3'
miRNA:   3'- auGugGUGGUGG-CCGCCGcCGCuuGg -5'
18057 5' -60.4 NC_004680.1 + 43534 0.68 0.365978
Target:  5'- gACGCCGCCACguucgaccagGGCGGCcGgGAACg -3'
miRNA:   3'- aUGUGGUGGUGg---------CCGCCGcCgCUUGg -5'
18057 5' -60.4 NC_004680.1 + 4216 0.68 0.365978
Target:  5'- gACAUCGCagACC-GCGGCGGaCGcGCCg -3'
miRNA:   3'- aUGUGGUGg-UGGcCGCCGCC-GCuUGG- -5'
18057 5' -60.4 NC_004680.1 + 20145 0.68 0.371823
Target:  5'- cACACUGCgggugauuuguuguCGCCggaggaucaGGCGGCGGUGGAUCu -3'
miRNA:   3'- aUGUGGUG--------------GUGG---------CCGCCGCCGCUUGG- -5'
18057 5' -60.4 NC_004680.1 + 8935 0.68 0.374347
Target:  5'- cGCACC-UCAC--GCGGCGGCGAcacacgcuuACCg -3'
miRNA:   3'- aUGUGGuGGUGgcCGCCGCCGCU---------UGG- -5'
18057 5' -60.4 NC_004680.1 + 24761 0.68 0.374347
Target:  5'- cACAuCCACCucgggaucuCCgGGCaGCGGCGGcACCg -3'
miRNA:   3'- aUGU-GGUGGu--------GG-CCGcCGCCGCU-UGG- -5'
18057 5' -60.4 NC_004680.1 + 24470 0.68 0.382845
Target:  5'- gACACUG--AUCGGUGGCGGCGGAa- -3'
miRNA:   3'- aUGUGGUggUGGCCGCCGCCGCUUgg -5'
18057 5' -60.4 NC_004680.1 + 12359 0.68 0.382845
Target:  5'- cACACCAaCACCaGCGccuugGGCGGGCCa -3'
miRNA:   3'- aUGUGGUgGUGGcCGCcg---CCGCUUGG- -5'
18057 5' -60.4 NC_004680.1 + 43619 0.67 0.390601
Target:  5'- --gGCCGCC-CUGGUcgaacguGGCGGCGucgcAACCg -3'
miRNA:   3'- augUGGUGGuGGCCG-------CCGCCGC----UUGG- -5'
18057 5' -60.4 NC_004680.1 + 12431 0.67 0.39147
Target:  5'- aGCACCAgacgcgggacuCC-CCGGCGcggcacccgaaGCGGCGGucGCCc -3'
miRNA:   3'- aUGUGGU-----------GGuGGCCGC-----------CGCCGCU--UGG- -5'
18057 5' -60.4 NC_004680.1 + 28715 0.67 0.39147
Target:  5'- cGCGCCACCA-CGGCGG-GGUuucacgcauGCCg -3'
miRNA:   3'- aUGUGGUGGUgGCCGCCgCCGcu-------UGG- -5'
18057 5' -60.4 NC_004680.1 + 45155 0.67 0.39147
Target:  5'- cACACCAUCGCaGGCcccguggucucGGCGGCucucGCCg -3'
miRNA:   3'- aUGUGGUGGUGgCCG-----------CCGCCGcu--UGG- -5'
18057 5' -60.4 NC_004680.1 + 43484 0.67 0.39934
Target:  5'- gGCACCGCUACaCGugggacaaguuucGCGGCaGGUGGgacACCg -3'
miRNA:   3'- aUGUGGUGGUG-GC-------------CGCCG-CCGCU---UGG- -5'
18057 5' -60.4 NC_004680.1 + 749 0.67 0.40022
Target:  5'- gGCACCguuuggcugGCCGUCGGCGGUucGaGCGGGCUg -3'
miRNA:   3'- aUGUGG---------UGGUGGCCGCCG--C-CGCUUGG- -5'
18057 5' -60.4 NC_004680.1 + 38225 0.67 0.40022
Target:  5'- aACGCCAgCCugCGGUGcCGGCuacaaGAACUa -3'
miRNA:   3'- aUGUGGU-GGugGCCGCcGCCG-----CUUGG- -5'
18057 5' -60.4 NC_004680.1 + 33235 0.67 0.40642
Target:  5'- aGCAuCCACUucuCCacaguuguggaugaGGUGGUGGCGAugCg -3'
miRNA:   3'- aUGU-GGUGGu--GG--------------CCGCCGCCGCUugG- -5'
18057 5' -60.4 NC_004680.1 + 58986 0.67 0.409095
Target:  5'- cACACCACaCACCGcUGG-GGC-AACCa -3'
miRNA:   3'- aUGUGGUG-GUGGCcGCCgCCGcUUGG- -5'
18057 5' -60.4 NC_004680.1 + 886 0.67 0.409095
Target:  5'- gACGCUGCCGgcaauCCGGUGG-GGCGu-CCg -3'
miRNA:   3'- aUGUGGUGGU-----GGCCGCCgCCGCuuGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.