Results 101 - 112 of 112 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
18057 | 5' | -60.4 | NC_004680.1 | + | 42724 | 0.66 | 0.464806 |
Target: 5'- uUGCGCCGCaaguuccCCGGUcGUGGCugGGACCg -3' miRNA: 3'- -AUGUGGUGgu-----GGCCGcCGCCG--CUUGG- -5' |
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18057 | 5' | -60.4 | NC_004680.1 | + | 42771 | 0.66 | 0.464806 |
Target: 5'- cUGCACC-CCACCGucGCcGCGGCau-CCg -3' miRNA: 3'- -AUGUGGuGGUGGC--CGcCGCCGcuuGG- -5' |
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18057 | 5' | -60.4 | NC_004680.1 | + | 26040 | 0.66 | 0.471562 |
Target: 5'- gACAUCACCAUCgucuucgauGGUcaccacggcaucauGGCGGCGGAUa -3' miRNA: 3'- aUGUGGUGGUGG---------CCG--------------CCGCCGCUUGg -5' |
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18057 | 5' | -60.4 | NC_004680.1 | + | 19820 | 0.66 | 0.471562 |
Target: 5'- cGCGCCcuuACCGCCGuuacccgcuccaccaGGUGGCGuACCg -3' miRNA: 3'- aUGUGG---UGGUGGCcg-------------CCGCCGCuUGG- -5' |
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18057 | 5' | -60.4 | NC_004680.1 | + | 285 | 0.66 | 0.474473 |
Target: 5'- cACACaaCACCAuCCGGCaGGUcuGGCGccACCa -3' miRNA: 3'- aUGUG--GUGGU-GGCCG-CCG--CCGCu-UGG- -5' |
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18057 | 5' | -60.4 | NC_004680.1 | + | 33970 | 0.66 | 0.474473 |
Target: 5'- cUGCAUCGCCACauacaaCGGCGGCaacaacGGC--ACCu -3' miRNA: 3'- -AUGUGGUGGUG------GCCGCCG------CCGcuUGG- -5' |
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18057 | 5' | -60.4 | NC_004680.1 | + | 25421 | 0.66 | 0.474473 |
Target: 5'- gACGCCGa-ACUGGCGGCccucgucuacgaGGCGAugACUg -3' miRNA: 3'- aUGUGGUggUGGCCGCCG------------CCGCU--UGG- -5' |
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18057 | 5' | -60.4 | NC_004680.1 | + | 14699 | 0.66 | 0.474473 |
Target: 5'- cUGCGCCGguUCGCCaGGCGacuucGCGGgGAucGCCg -3' miRNA: 3'- -AUGUGGU--GGUGG-CCGC-----CGCCgCU--UGG- -5' |
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18057 | 5' | -60.4 | NC_004680.1 | + | 41597 | 0.66 | 0.474473 |
Target: 5'- aGCACC-UCACCaaccaggggguGGUguaGGUGGCGAACUc -3' miRNA: 3'- aUGUGGuGGUGG-----------CCG---CCGCCGCUUGG- -5' |
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18057 | 5' | -60.4 | NC_004680.1 | + | 39384 | 0.66 | 0.484241 |
Target: 5'- -cCAUCugCACCagGGCGGCcagugGGCGuGCUg -3' miRNA: 3'- auGUGGugGUGG--CCGCCG-----CCGCuUGG- -5' |
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18057 | 5' | -60.4 | NC_004680.1 | + | 45875 | 0.66 | 0.494103 |
Target: 5'- gUACGCCAgCGaCGGUGGUccGGUGAAUg -3' miRNA: 3'- -AUGUGGUgGUgGCCGCCG--CCGCUUGg -5' |
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18057 | 5' | -60.4 | NC_004680.1 | + | 22775 | 0.66 | 0.494103 |
Target: 5'- gGCGuCCGCC-CCGGgagaaGGCGGcCGAGUCg -3' miRNA: 3'- aUGU-GGUGGuGGCCg----CCGCC-GCUUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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