miRNA display CGI


Results 61 - 80 of 112 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18057 5' -60.4 NC_004680.1 + 25702 0.69 0.318521
Target:  5'- cACGCCugCGCCacaGGCcccGGCGGagcagGGGCCa -3'
miRNA:   3'- aUGUGGugGUGG---CCG---CCGCCg----CUUGG- -5'
18057 5' -60.4 NC_004680.1 + 25152 0.69 0.318521
Target:  5'- aACGCCACCACCaccuugucguGGCGcaGCGGaaaaGGugCg -3'
miRNA:   3'- aUGUGGUGGUGG----------CCGC--CGCCg---CUugG- -5'
18057 5' -60.4 NC_004680.1 + 25036 0.69 0.31777
Target:  5'- aGCACCugggcagGCaggucCCGGUGGCGGUgGGGCCg -3'
miRNA:   3'- aUGUGG-------UGgu---GGCCGCCGCCG-CUUGG- -5'
18057 5' -60.4 NC_004680.1 + 9523 0.69 0.311076
Target:  5'- ----gCugCugCGGUGGCGGCGAAg- -3'
miRNA:   3'- augugGugGugGCCGCCGCCGCUUgg -5'
18057 5' -60.4 NC_004680.1 + 27433 0.69 0.311076
Target:  5'- cACACCACCAUCGGauGCcuGCGAGa- -3'
miRNA:   3'- aUGUGGUGGUGGCCgcCGc-CGCUUgg -5'
18057 5' -60.4 NC_004680.1 + 55871 0.69 0.303763
Target:  5'- --gGCCAUCGCgagggUGGCGGCuuuGGCGAGCg -3'
miRNA:   3'- augUGGUGGUG-----GCCGCCG---CCGCUUGg -5'
18057 5' -60.4 NC_004680.1 + 13630 0.69 0.301596
Target:  5'- aUugGCCGCUguacuacgaagguGCCGGCGGCGGauacaucuacGCCa -3'
miRNA:   3'- -AugUGGUGG-------------UGGCCGCCGCCgcu-------UGG- -5'
18057 5' -60.4 NC_004680.1 + 38440 0.69 0.296584
Target:  5'- aACGCC-UCACgGGCaGCGGCGAGa- -3'
miRNA:   3'- aUGUGGuGGUGgCCGcCGCCGCUUgg -5'
18057 5' -60.4 NC_004680.1 + 12466 0.7 0.289537
Target:  5'- gACACCGgaGCCGGaccCGGCaGUGGACCc -3'
miRNA:   3'- aUGUGGUggUGGCC---GCCGcCGCUUGG- -5'
18057 5' -60.4 NC_004680.1 + 57635 0.7 0.282622
Target:  5'- gGCACCACCAaacCCGG-GGCGGa-GACa -3'
miRNA:   3'- aUGUGGUGGU---GGCCgCCGCCgcUUGg -5'
18057 5' -60.4 NC_004680.1 + 27829 0.7 0.275839
Target:  5'- gUugGCCGCagcucggcgGCCGGaCGGUGGUGGACg -3'
miRNA:   3'- -AugUGGUGg--------UGGCC-GCCGCCGCUUGg -5'
18057 5' -60.4 NC_004680.1 + 42297 0.7 0.269186
Target:  5'- gGCACgCugCACgGuGCGGUGGUGGcaGCCc -3'
miRNA:   3'- aUGUG-GugGUGgC-CGCCGCCGCU--UGG- -5'
18057 5' -60.4 NC_004680.1 + 2687 0.7 0.269186
Target:  5'- aGguCCGCUAUgCGGUGGUGGCgGGACCu -3'
miRNA:   3'- aUguGGUGGUG-GCCGCCGCCG-CUUGG- -5'
18057 5' -60.4 NC_004680.1 + 12163 0.7 0.262664
Target:  5'- gGCGCUGCCGCCcaGGUauccguuccgacGGUGGCGGuaGCCg -3'
miRNA:   3'- aUGUGGUGGUGG--CCG------------CCGCCGCU--UGG- -5'
18057 5' -60.4 NC_004680.1 + 39736 0.7 0.262664
Target:  5'- gGCGCUcCCugCGGCGcucccuGCGGCGcuCCg -3'
miRNA:   3'- aUGUGGuGGugGCCGC------CGCCGCuuGG- -5'
18057 5' -60.4 NC_004680.1 + 39808 0.7 0.262664
Target:  5'- gGCGCUcCCugCGGCGcucucuGCGGCGcuCCa -3'
miRNA:   3'- aUGUGGuGGugGCCGC------CGCCGCuuGG- -5'
18057 5' -60.4 NC_004680.1 + 39700 0.7 0.262664
Target:  5'- gGCGCUcCCugCGGCGcuccauGCGGCGcuCCa -3'
miRNA:   3'- aUGUGGuGGugGCCGC------CGCCGCuuGG- -5'
18057 5' -60.4 NC_004680.1 + 47840 0.7 0.262664
Target:  5'- aGCGCCG--GCUGGCuGCGGCGGuugGCCg -3'
miRNA:   3'- aUGUGGUggUGGCCGcCGCCGCU---UGG- -5'
18057 5' -60.4 NC_004680.1 + 39664 0.7 0.262664
Target:  5'- gGCGCUcCCugCGGCGcuccauGCGGCGcuCCa -3'
miRNA:   3'- aUGUGGuGGugGCCGC------CGCCGCuuGG- -5'
18057 5' -60.4 NC_004680.1 + 45873 0.7 0.262664
Target:  5'- cUACAUCGUCACCGGUGGaacCGAACCa -3'
miRNA:   3'- -AUGUGGUGGUGGCCGCCgccGCUUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.