miRNA display CGI


Results 81 - 100 of 112 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18057 5' -60.4 NC_004680.1 + 39940 0.66 0.455242
Target:  5'- gGCGCUcUCugCGGCGcucccuGCGGCGcuCCg -3'
miRNA:   3'- aUGUGGuGGugGCCGC------CGCCGCuuGG- -5'
18057 5' -60.4 NC_004680.1 + 40887 0.73 0.179621
Target:  5'- gUGgACCACCGCCcGCGGC-GUGGACUa -3'
miRNA:   3'- -AUgUGGUGGUGGcCGCCGcCGCUUGG- -5'
18057 5' -60.4 NC_004680.1 + 41281 0.71 0.2262
Target:  5'- aUGCACCAacaaCAUUGGCGGUauuGGUGGACg -3'
miRNA:   3'- -AUGUGGUg---GUGGCCGCCG---CCGCUUGg -5'
18057 5' -60.4 NC_004680.1 + 41597 0.66 0.474473
Target:  5'- aGCACC-UCACCaaccaggggguGGUguaGGUGGCGAACUc -3'
miRNA:   3'- aUGUGGuGGUGG-----------CCG---CCGCCGCUUGG- -5'
18057 5' -60.4 NC_004680.1 + 41647 0.73 0.179621
Target:  5'- gUACACCGauUCugCGGCGGCGaCGAagaaaGCCa -3'
miRNA:   3'- -AUGUGGU--GGugGCCGCCGCcGCU-----UGG- -5'
18057 5' -60.4 NC_004680.1 + 42297 0.7 0.269186
Target:  5'- gGCACgCugCACgGuGCGGUGGUGGcaGCCc -3'
miRNA:   3'- aUGUG-GugGUGgC-CGCCGCCGCU--UGG- -5'
18057 5' -60.4 NC_004680.1 + 42532 0.66 0.449554
Target:  5'- cGCGCC-CCGCCucaugcgacaccccuGaGCGGCGGaUGAACg -3'
miRNA:   3'- aUGUGGuGGUGG---------------C-CGCCGCC-GCUUGg -5'
18057 5' -60.4 NC_004680.1 + 42724 0.66 0.464806
Target:  5'- uUGCGCCGCaaguuccCCGGUcGUGGCugGGACCg -3'
miRNA:   3'- -AUGUGGUGgu-----GGCCGcCGCCG--CUUGG- -5'
18057 5' -60.4 NC_004680.1 + 42771 0.66 0.464806
Target:  5'- cUGCACC-CCACCGucGCcGCGGCau-CCg -3'
miRNA:   3'- -AUGUGGuGGUGGC--CGcCGCCGcuuGG- -5'
18057 5' -60.4 NC_004680.1 + 42829 0.67 0.417186
Target:  5'- aGCG-CACUGCCGGCGGUcccagccacgaccGGgGAACUu -3'
miRNA:   3'- aUGUgGUGGUGGCCGCCG-------------CCgCUUGG- -5'
18057 5' -60.4 NC_004680.1 + 43041 0.67 0.418091
Target:  5'- aACGCCgACCACUGGUG-CaGGCucGCCg -3'
miRNA:   3'- aUGUGG-UGGUGGCCGCcG-CCGcuUGG- -5'
18057 5' -60.4 NC_004680.1 + 43157 0.7 0.255638
Target:  5'- cACACCuuCACCaGUGGgacucguucuucuCGGCGAGCCu -3'
miRNA:   3'- aUGUGGugGUGGcCGCC-------------GCCGCUUGG- -5'
18057 5' -60.4 NC_004680.1 + 43367 0.72 0.188688
Target:  5'- cACACCAaguaCugcucugauucguGCCGGCaGGCGGCGAuCCu -3'
miRNA:   3'- aUGUGGUg---G-------------UGGCCG-CCGCCGCUuGG- -5'
18057 5' -60.4 NC_004680.1 + 43484 0.67 0.39934
Target:  5'- gGCACCGCUACaCGugggacaaguuucGCGGCaGGUGGgacACCg -3'
miRNA:   3'- aUGUGGUGGUG-GC-------------CGCCG-CCGCU---UGG- -5'
18057 5' -60.4 NC_004680.1 + 43534 0.68 0.365978
Target:  5'- gACGCCGCCACguucgaccagGGCGGCcGgGAACg -3'
miRNA:   3'- aUGUGGUGGUGg---------CCGCCGcCgCUUGg -5'
18057 5' -60.4 NC_004680.1 + 43619 0.67 0.390601
Target:  5'- --gGCCGCC-CUGGUcgaacguGGCGGCGucgcAACCg -3'
miRNA:   3'- augUGGUGGuGGCCG-------CCGCCGC----UUGG- -5'
18057 5' -60.4 NC_004680.1 + 45155 0.67 0.39147
Target:  5'- cACACCAUCGCaGGCcccguggucucGGCGGCucucGCCg -3'
miRNA:   3'- aUGUGGUGGUGgCCG-----------CCGCCGcu--UGG- -5'
18057 5' -60.4 NC_004680.1 + 45274 0.67 0.418091
Target:  5'- gACGCCA-CGuuGGUGucgucGCGGCGAgaGCCg -3'
miRNA:   3'- aUGUGGUgGUggCCGC-----CGCCGCU--UGG- -5'
18057 5' -60.4 NC_004680.1 + 45873 0.7 0.262664
Target:  5'- cUACAUCGUCACCGGUGGaacCGAACCa -3'
miRNA:   3'- -AUGUGGUGGUGGCCGCCgccGCUUGG- -5'
18057 5' -60.4 NC_004680.1 + 45875 0.66 0.494103
Target:  5'- gUACGCCAgCGaCGGUGGUccGGUGAAUg -3'
miRNA:   3'- -AUGUGGUgGUgGCCGCCG--CCGCUUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.