miRNA display CGI


Results 61 - 80 of 112 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18057 5' -60.4 NC_004680.1 + 26040 0.66 0.471562
Target:  5'- gACAUCACCAUCgucuucgauGGUcaccacggcaucauGGCGGCGGAUa -3'
miRNA:   3'- aUGUGGUGGUGG---------CCG--------------CCGCCGCUUGg -5'
18057 5' -60.4 NC_004680.1 + 25815 0.68 0.365978
Target:  5'- gUGCGuuCgGCaCugCGGCGGCGGCc-GCCa -3'
miRNA:   3'- -AUGU--GgUG-GugGCCGCCGCCGcuUGG- -5'
18057 5' -60.4 NC_004680.1 + 25702 0.69 0.318521
Target:  5'- cACGCCugCGCCacaGGCcccGGCGGagcagGGGCCa -3'
miRNA:   3'- aUGUGGugGUGG---CCG---CCGCCg----CUUGG- -5'
18057 5' -60.4 NC_004680.1 + 25493 0.66 0.464806
Target:  5'- gACAUCAgaCACCGcGUGGCGGgGcucaaGGCCu -3'
miRNA:   3'- aUGUGGUg-GUGGC-CGCCGCCgC-----UUGG- -5'
18057 5' -60.4 NC_004680.1 + 25421 0.66 0.474473
Target:  5'- gACGCCGa-ACUGGCGGCccucgucuacgaGGCGAugACUg -3'
miRNA:   3'- aUGUGGUggUGGCCGCCG------------CCGCU--UGG- -5'
18057 5' -60.4 NC_004680.1 + 25239 0.73 0.170497
Target:  5'- cUGCGCCACgACaagguGGUGGUGGCGuugGCCu -3'
miRNA:   3'- -AUGUGGUGgUGg----CCGCCGCCGCu--UGG- -5'
18057 5' -60.4 NC_004680.1 + 25152 0.69 0.318521
Target:  5'- aACGCCACCACCaccuugucguGGCGcaGCGGaaaaGGugCg -3'
miRNA:   3'- aUGUGGUGGUGG----------CCGC--CGCCg---CUugG- -5'
18057 5' -60.4 NC_004680.1 + 25036 0.69 0.31777
Target:  5'- aGCACCugggcagGCaggucCCGGUGGCGGUgGGGCCg -3'
miRNA:   3'- aUGUGG-------UGgu---GGCCGCCGCCG-CUUGG- -5'
18057 5' -60.4 NC_004680.1 + 24980 0.79 0.062497
Target:  5'- -cCGCCACCACCGcCGGCGGCaccGCCa -3'
miRNA:   3'- auGUGGUGGUGGCcGCCGCCGcu-UGG- -5'
18057 5' -60.4 NC_004680.1 + 24939 0.73 0.170497
Target:  5'- aGCACCAuCUACuCGGUggcaaaGGCGGCGAugugACCg -3'
miRNA:   3'- aUGUGGU-GGUG-GCCG------CCGCCGCU----UGG- -5'
18057 5' -60.4 NC_004680.1 + 24897 0.78 0.078009
Target:  5'- gGCGgUGCCGCCGGCGGUGGUGGcgguuCCg -3'
miRNA:   3'- aUGUgGUGGUGGCCGCCGCCGCUu----GG- -5'
18057 5' -60.4 NC_004680.1 + 24761 0.68 0.374347
Target:  5'- cACAuCCACCucgggaucuCCgGGCaGCGGCGGcACCg -3'
miRNA:   3'- aUGU-GGUGGu--------GG-CCGcCGCCGCU-UGG- -5'
18057 5' -60.4 NC_004680.1 + 24470 0.68 0.382845
Target:  5'- gACACUG--AUCGGUGGCGGCGGAa- -3'
miRNA:   3'- aUGUGGUggUGGCCGCCGCCGCUUgg -5'
18057 5' -60.4 NC_004680.1 + 24217 0.71 0.243866
Target:  5'- gGCACCACCcuucccggcACCGGCa-CGGCGggUg -3'
miRNA:   3'- aUGUGGUGG---------UGGCCGccGCCGCuuGg -5'
18057 5' -60.4 NC_004680.1 + 22775 0.66 0.494103
Target:  5'- gGCGuCCGCC-CCGGgagaaGGCGGcCGAGUCg -3'
miRNA:   3'- aUGU-GGUGGuGGCCg----CCGCC-GCUUGG- -5'
18057 5' -60.4 NC_004680.1 + 22061 0.68 0.341655
Target:  5'- gUAUAUCGCgAugcgugguCCGGCGGCGuuCGAGCCg -3'
miRNA:   3'- -AUGUGGUGgU--------GGCCGCCGCc-GCUUGG- -5'
18057 5' -60.4 NC_004680.1 + 21773 0.66 0.445785
Target:  5'- -uCGCgGCCgaauaaguggGCUGGCauGGCGGUGAACUu -3'
miRNA:   3'- auGUGgUGG----------UGGCCG--CCGCCGCUUGG- -5'
18057 5' -60.4 NC_004680.1 + 21575 0.72 0.188688
Target:  5'- cGCACuCACCcagcccggGCCGGUGGCcucaucuGGCGAGCa -3'
miRNA:   3'- aUGUG-GUGG--------UGGCCGCCG-------CCGCUUGg -5'
18057 5' -60.4 NC_004680.1 + 21441 0.68 0.356922
Target:  5'- gGCGCCGCCauacgugGCCGaCGG-GGCuGAGCCc -3'
miRNA:   3'- aUGUGGUGG-------UGGCcGCCgCCG-CUUGG- -5'
18057 5' -60.4 NC_004680.1 + 21313 0.7 0.262664
Target:  5'- cUGCAUCGaacccaauauCCACCGGCuccGGCGGCaccGGCCa -3'
miRNA:   3'- -AUGUGGU----------GGUGGCCG---CCGCCGc--UUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.