Results 81 - 100 of 112 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18057 | 5' | -60.4 | NC_004680.1 | + | 20145 | 0.68 | 0.371823 |
Target: 5'- cACACUGCgggugauuuguuguCGCCggaggaucaGGCGGCGGUGGAUCu -3' miRNA: 3'- aUGUGGUG--------------GUGG---------CCGCCGCCGCUUGG- -5' |
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18057 | 5' | -60.4 | NC_004680.1 | + | 19820 | 0.66 | 0.471562 |
Target: 5'- cGCGCCcuuACCGCCGuuacccgcuccaccaGGUGGCGuACCg -3' miRNA: 3'- aUGUGG---UGGUGGCcg-------------CCGCCGCuUGG- -5' |
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18057 | 5' | -60.4 | NC_004680.1 | + | 19601 | 0.71 | 0.220557 |
Target: 5'- ---gUUACCACCGGCGGCGccgucaccCGGGCCa -3' miRNA: 3'- auguGGUGGUGGCCGCCGCc-------GCUUGG- -5' |
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18057 | 5' | -60.4 | NC_004680.1 | + | 19517 | 0.67 | 0.427206 |
Target: 5'- -uCACCGCgCACCcauGUGGUGGCGuugaacuuACCg -3' miRNA: 3'- auGUGGUG-GUGGc--CGCCGCCGCu-------UGG- -5' |
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18057 | 5' | -60.4 | NC_004680.1 | + | 19433 | 0.79 | 0.06426 |
Target: 5'- aACGCCACCACaugGGUGcGCGGUGAGCa -3' miRNA: 3'- aUGUGGUGGUGg--CCGC-CGCCGCUUGg -5' |
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18057 | 5' | -60.4 | NC_004680.1 | + | 18441 | 0.67 | 0.436439 |
Target: 5'- ---uCCGCUAUCcGCGGCGGCGuGCa -3' miRNA: 3'- auguGGUGGUGGcCGCCGCCGCuUGg -5' |
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18057 | 5' | -60.4 | NC_004680.1 | + | 18206 | 0.71 | 0.2262 |
Target: 5'- gGCACCACCugcaACCGGau-CGGCGcGCCg -3' miRNA: 3'- aUGUGGUGG----UGGCCgccGCCGCuUGG- -5' |
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18057 | 5' | -60.4 | NC_004680.1 | + | 14699 | 0.66 | 0.474473 |
Target: 5'- cUGCGCCGguUCGCCaGGCGacuucGCGGgGAucGCCg -3' miRNA: 3'- -AUGUGGU--GGUGG-CCGC-----CGCCgCU--UGG- -5' |
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18057 | 5' | -60.4 | NC_004680.1 | + | 13630 | 0.69 | 0.301596 |
Target: 5'- aUugGCCGCUguacuacgaagguGCCGGCGGCGGauacaucuacGCCa -3' miRNA: 3'- -AugUGGUGG-------------UGGCCGCCGCCgcu-------UGG- -5' |
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18057 | 5' | -60.4 | NC_004680.1 | + | 13252 | 0.68 | 0.357739 |
Target: 5'- gUGCACCAUUuCUGGU-GCGGCGGuCCg -3' miRNA: 3'- -AUGUGGUGGuGGCCGcCGCCGCUuGG- -5' |
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18057 | 5' | -60.4 | NC_004680.1 | + | 12520 | 0.77 | 0.084729 |
Target: 5'- -cCGCCACCACCGGUGGUGGgcagcgGGGCUg -3' miRNA: 3'- auGUGGUGGUGGCCGCCGCCg-----CUUGG- -5' |
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18057 | 5' | -60.4 | NC_004680.1 | + | 12466 | 0.7 | 0.289537 |
Target: 5'- gACACCGgaGCCGGaccCGGCaGUGGACCc -3' miRNA: 3'- aUGUGGUggUGGCC---GCCGcCGCUUGG- -5' |
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18057 | 5' | -60.4 | NC_004680.1 | + | 12439 | 0.87 | 0.016576 |
Target: 5'- cUGC-CCACCACCGGUGGUGGCGGcgGCCc -3' miRNA: 3'- -AUGuGGUGGUGGCCGCCGCCGCU--UGG- -5' |
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18057 | 5' | -60.4 | NC_004680.1 | + | 12431 | 0.67 | 0.39147 |
Target: 5'- aGCACCAgacgcgggacuCC-CCGGCGcggcacccgaaGCGGCGGucGCCc -3' miRNA: 3'- aUGUGGU-----------GGuGGCCGC-----------CGCCGCU--UGG- -5' |
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18057 | 5' | -60.4 | NC_004680.1 | + | 12359 | 0.68 | 0.382845 |
Target: 5'- cACACCAaCACCaGCGccuugGGCGGGCCa -3' miRNA: 3'- aUGUGGUgGUGGcCGCcg---CCGCUUGG- -5' |
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18057 | 5' | -60.4 | NC_004680.1 | + | 12298 | 0.67 | 0.436439 |
Target: 5'- gUGC-CCAUCccgACCaguggGGCGGgGGCGAccGCCg -3' miRNA: 3'- -AUGuGGUGG---UGG-----CCGCCgCCGCU--UGG- -5' |
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18057 | 5' | -60.4 | NC_004680.1 | + | 12283 | 0.68 | 0.349631 |
Target: 5'- aACGCUGCCGCggaCGG-GGCGGCu-ACCg -3' miRNA: 3'- aUGUGGUGGUG---GCCgCCGCCGcuUGG- -5' |
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18057 | 5' | -60.4 | NC_004680.1 | + | 12163 | 0.7 | 0.262664 |
Target: 5'- gGCGCUGCCGCCcaGGUauccguuccgacGGUGGCGGuaGCCg -3' miRNA: 3'- aUGUGGUGGUGG--CCG------------CCGCCGCU--UGG- -5' |
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18057 | 5' | -60.4 | NC_004680.1 | + | 10306 | 0.72 | 0.209631 |
Target: 5'- cAUGCUgACCuuGCCGGUGGCGGCGAuuuGCa -3' miRNA: 3'- aUGUGG-UGG--UGGCCGCCGCCGCU---UGg -5' |
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18057 | 5' | -60.4 | NC_004680.1 | + | 10222 | 0.66 | 0.455242 |
Target: 5'- -uCGCCGCCACCGGCaaGGuCaGCauGGAUCa -3' miRNA: 3'- auGUGGUGGUGGCCG--CC-GcCG--CUUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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