miRNA display CGI


Results 41 - 60 of 112 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18057 5' -60.4 NC_004680.1 + 12439 0.87 0.016576
Target:  5'- cUGC-CCACCACCGGUGGUGGCGGcgGCCc -3'
miRNA:   3'- -AUGuGGUGGUGGCCGCCGCCGCU--UGG- -5'
18057 5' -60.4 NC_004680.1 + 12163 0.7 0.262664
Target:  5'- gGCGCUGCCGCCcaGGUauccguuccgacGGUGGCGGuaGCCg -3'
miRNA:   3'- aUGUGGUGGUGG--CCG------------CCGCCGCU--UGG- -5'
18057 5' -60.4 NC_004680.1 + 45873 0.7 0.262664
Target:  5'- cUACAUCGUCACCGGUGGaacCGAACCa -3'
miRNA:   3'- -AUGUGGUGGUGGCCGCCgccGCUUGG- -5'
18057 5' -60.4 NC_004680.1 + 5210 0.68 0.365148
Target:  5'- cUACAagGCCGCUGGcCGGCagaccucGGCGGACg -3'
miRNA:   3'- -AUGUggUGGUGGCC-GCCG-------CCGCUUGg -5'
18057 5' -60.4 NC_004680.1 + 58688 0.68 0.349631
Target:  5'- cUACACCAaugCACUGGCGGaGGUGcGCa -3'
miRNA:   3'- -AUGUGGUg--GUGGCCGCCgCCGCuUGg -5'
18057 5' -60.4 NC_004680.1 + 22061 0.68 0.341655
Target:  5'- gUAUAUCGCgAugcgugguCCGGCGGCGuuCGAGCCg -3'
miRNA:   3'- -AUGUGGUGgU--------GGCCGCCGCc-GCUUGG- -5'
18057 5' -60.4 NC_004680.1 + 26797 0.69 0.333811
Target:  5'- gGCACCGgCAUCGGCGaugaccgcaaGUGGUGGugCc -3'
miRNA:   3'- aUGUGGUgGUGGCCGC----------CGCCGCUugG- -5'
18057 5' -60.4 NC_004680.1 + 25702 0.69 0.318521
Target:  5'- cACGCCugCGCCacaGGCcccGGCGGagcagGGGCCa -3'
miRNA:   3'- aUGUGGugGUGG---CCG---CCGCCg----CUUGG- -5'
18057 5' -60.4 NC_004680.1 + 25152 0.69 0.318521
Target:  5'- aACGCCACCACCaccuugucguGGCGcaGCGGaaaaGGugCg -3'
miRNA:   3'- aUGUGGUGGUGG----------CCGC--CGCCg---CUugG- -5'
18057 5' -60.4 NC_004680.1 + 25036 0.69 0.31777
Target:  5'- aGCACCugggcagGCaggucCCGGUGGCGGUgGGGCCg -3'
miRNA:   3'- aUGUGG-------UGgu---GGCCGCCGCCG-CUUGG- -5'
18057 5' -60.4 NC_004680.1 + 9523 0.69 0.311076
Target:  5'- ----gCugCugCGGUGGCGGCGAAg- -3'
miRNA:   3'- augugGugGugGCCGCCGCCGCUUgg -5'
18057 5' -60.4 NC_004680.1 + 13630 0.69 0.301596
Target:  5'- aUugGCCGCUguacuacgaagguGCCGGCGGCGGauacaucuacGCCa -3'
miRNA:   3'- -AugUGGUGG-------------UGGCCGCCGCCgcu-------UGG- -5'
18057 5' -60.4 NC_004680.1 + 27829 0.7 0.275839
Target:  5'- gUugGCCGCagcucggcgGCCGGaCGGUGGUGGACg -3'
miRNA:   3'- -AugUGGUGg--------UGGCC-GCCGCCGCUUGg -5'
18057 5' -60.4 NC_004680.1 + 2687 0.7 0.269186
Target:  5'- aGguCCGCUAUgCGGUGGUGGCgGGACCu -3'
miRNA:   3'- aUguGGUGGUG-GCCGCCGCCG-CUUGG- -5'
18057 5' -60.4 NC_004680.1 + 47840 0.7 0.262664
Target:  5'- aGCGCCG--GCUGGCuGCGGCGGuugGCCg -3'
miRNA:   3'- aUGUGGUggUGGCCGcCGCCGCU---UGG- -5'
18057 5' -60.4 NC_004680.1 + 33970 0.66 0.474473
Target:  5'- cUGCAUCGCCACauacaaCGGCGGCaacaacGGC--ACCu -3'
miRNA:   3'- -AUGUGGUGGUG------GCCGCCG------CCGcuUGG- -5'
18057 5' -60.4 NC_004680.1 + 25421 0.66 0.474473
Target:  5'- gACGCCGa-ACUGGCGGCccucgucuacgaGGCGAugACUg -3'
miRNA:   3'- aUGUGGUggUGGCCGCCG------------CCGCU--UGG- -5'
18057 5' -60.4 NC_004680.1 + 14699 0.66 0.474473
Target:  5'- cUGCGCCGguUCGCCaGGCGacuucGCGGgGAucGCCg -3'
miRNA:   3'- -AUGUGGU--GGUGG-CCGC-----CGCCgCU--UGG- -5'
18057 5' -60.4 NC_004680.1 + 39384 0.66 0.484241
Target:  5'- -cCAUCugCACCagGGCGGCcagugGGCGuGCUg -3'
miRNA:   3'- auGUGGugGUGG--CCGCCG-----CCGCuUGG- -5'
18057 5' -60.4 NC_004680.1 + 2948 1.1 0.000308
Target:  5'- gUACACCACCACCGGCGGCGGCGAACCg -3'
miRNA:   3'- -AUGUGGUGGUGGCCGCCGCCGCUUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.