Results 101 - 112 of 112 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18057 | 5' | -60.4 | NC_004680.1 | + | 58401 | 0.68 | 0.348827 |
Target: 5'- gGCGCCggcaggugaGCCAgugggcuguggugUCGGCGGCuuuGGCGAugCg -3' miRNA: 3'- aUGUGG---------UGGU-------------GGCCGCCG---CCGCUugG- -5' |
|||||||
18057 | 5' | -60.4 | NC_004680.1 | + | 12283 | 0.68 | 0.349631 |
Target: 5'- aACGCUGCCGCggaCGG-GGCGGCu-ACCg -3' miRNA: 3'- aUGUGGUGGUG---GCCgCCGCCGcuUGG- -5' |
|||||||
18057 | 5' | -60.4 | NC_004680.1 | + | 21441 | 0.68 | 0.356922 |
Target: 5'- gGCGCCGCCauacgugGCCGaCGG-GGCuGAGCCc -3' miRNA: 3'- aUGUGGUGG-------UGGCcGCCgCCG-CUUGG- -5' |
|||||||
18057 | 5' | -60.4 | NC_004680.1 | + | 13252 | 0.68 | 0.357739 |
Target: 5'- gUGCACCAUUuCUGGU-GCGGCGGuCCg -3' miRNA: 3'- -AUGUGGUGGuGGCCGcCGCCGCUuGG- -5' |
|||||||
18057 | 5' | -60.4 | NC_004680.1 | + | 8935 | 0.68 | 0.374347 |
Target: 5'- cGCACC-UCAC--GCGGCGGCGAcacacgcuuACCg -3' miRNA: 3'- aUGUGGuGGUGgcCGCCGCCGCU---------UGG- -5' |
|||||||
18057 | 5' | -60.4 | NC_004680.1 | + | 12359 | 0.68 | 0.382845 |
Target: 5'- cACACCAaCACCaGCGccuugGGCGGGCCa -3' miRNA: 3'- aUGUGGUgGUGGcCGCcg---CCGCUUGG- -5' |
|||||||
18057 | 5' | -60.4 | NC_004680.1 | + | 43619 | 0.67 | 0.390601 |
Target: 5'- --gGCCGCC-CUGGUcgaacguGGCGGCGucgcAACCg -3' miRNA: 3'- augUGGUGGuGGCCG-------CCGCCGC----UUGG- -5' |
|||||||
18057 | 5' | -60.4 | NC_004680.1 | + | 28715 | 0.67 | 0.39147 |
Target: 5'- cGCGCCACCA-CGGCGG-GGUuucacgcauGCCg -3' miRNA: 3'- aUGUGGUGGUgGCCGCCgCCGcu-------UGG- -5' |
|||||||
18057 | 5' | -60.4 | NC_004680.1 | + | 12431 | 0.67 | 0.39147 |
Target: 5'- aGCACCAgacgcgggacuCC-CCGGCGcggcacccgaaGCGGCGGucGCCc -3' miRNA: 3'- aUGUGGU-----------GGuGGCCGC-----------CGCCGCU--UGG- -5' |
|||||||
18057 | 5' | -60.4 | NC_004680.1 | + | 33235 | 0.67 | 0.40642 |
Target: 5'- aGCAuCCACUucuCCacaguuguggaugaGGUGGUGGCGAugCg -3' miRNA: 3'- aUGU-GGUGGu--GG--------------CCGCCGCCGCUugG- -5' |
|||||||
18057 | 5' | -60.4 | NC_004680.1 | + | 42829 | 0.67 | 0.417186 |
Target: 5'- aGCG-CACUGCCGGCGGUcccagccacgaccGGgGAACUu -3' miRNA: 3'- aUGUgGUGGUGGCCGCCG-------------CCgCUUGG- -5' |
|||||||
18057 | 5' | -60.4 | NC_004680.1 | + | 45875 | 0.66 | 0.494103 |
Target: 5'- gUACGCCAgCGaCGGUGGUccGGUGAAUg -3' miRNA: 3'- -AUGUGGUgGUgGCCGCCG--CCGCUUGg -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home