miRNA display CGI


Results 41 - 60 of 112 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18057 5' -60.4 NC_004680.1 + 21441 0.68 0.356922
Target:  5'- gGCGCCGCCauacgugGCCGaCGG-GGCuGAGCCc -3'
miRNA:   3'- aUGUGGUGG-------UGGCcGCCgCCG-CUUGG- -5'
18057 5' -60.4 NC_004680.1 + 42771 0.66 0.464806
Target:  5'- cUGCACC-CCACCGucGCcGCGGCau-CCg -3'
miRNA:   3'- -AUGUGGuGGUGGC--CGcCGCCGcuuGG- -5'
18057 5' -60.4 NC_004680.1 + 39892 0.7 0.262664
Target:  5'- gGCGCUcCCugCGGCGcucccuGCGGCGcuCCa -3'
miRNA:   3'- aUGUGGuGGugGCCGC------CGCCGCuuGG- -5'
18057 5' -60.4 NC_004680.1 + 26040 0.66 0.471562
Target:  5'- gACAUCACCAUCgucuucgauGGUcaccacggcaucauGGCGGCGGAUa -3'
miRNA:   3'- aUGUGGUGGUGG---------CCG--------------CCGCCGCUUGg -5'
18057 5' -60.4 NC_004680.1 + 42532 0.66 0.449554
Target:  5'- cGCGCC-CCGCCucaugcgacaccccuGaGCGGCGGaUGAACg -3'
miRNA:   3'- aUGUGGuGGUGG---------------C-CGCCGCC-GCUUGg -5'
18057 5' -60.4 NC_004680.1 + 45274 0.67 0.418091
Target:  5'- gACGCCA-CGuuGGUGucgucGCGGCGAgaGCCg -3'
miRNA:   3'- aUGUGGUgGUggCCGC-----CGCCGCU--UGG- -5'
18057 5' -60.4 NC_004680.1 + 56470 0.72 0.209631
Target:  5'- cUGCGCCGCUGuuGGUGGCGucgaggagcGCGGACa -3'
miRNA:   3'- -AUGUGGUGGUggCCGCCGC---------CGCUUGg -5'
18057 5' -60.4 NC_004680.1 + 27919 0.71 0.231965
Target:  5'- -cCACCACCGuCCGGCcgccgagcuGCGGCcAACCa -3'
miRNA:   3'- auGUGGUGGU-GGCCGc--------CGCCGcUUGG- -5'
18057 5' -60.4 NC_004680.1 + 34660 0.7 0.25627
Target:  5'- cGCACCAUCcCCGGCGaCGGC--ACCc -3'
miRNA:   3'- aUGUGGUGGuGGCCGCcGCCGcuUGG- -5'
18057 5' -60.4 NC_004680.1 + 2948 1.1 0.000308
Target:  5'- gUACACCACCACCGGCGGCGGCGAACCg -3'
miRNA:   3'- -AUGUGGUGGUGGCCGCCGCCGCUUGG- -5'
18057 5' -60.4 NC_004680.1 + 39736 0.7 0.262664
Target:  5'- gGCGCUcCCugCGGCGcucccuGCGGCGcuCCg -3'
miRNA:   3'- aUGUGGuGGugGCCGC------CGCCGCuuGG- -5'
18057 5' -60.4 NC_004680.1 + 42297 0.7 0.269186
Target:  5'- gGCACgCugCACgGuGCGGUGGUGGcaGCCc -3'
miRNA:   3'- aUGUG-GugGUGgC-CGCCGCCGCU--UGG- -5'
18057 5' -60.4 NC_004680.1 + 55871 0.69 0.303763
Target:  5'- --gGCCAUCGCgagggUGGCGGCuuuGGCGAGCg -3'
miRNA:   3'- augUGGUGGUG-----GCCGCCG---CCGCUUGg -5'
18057 5' -60.4 NC_004680.1 + 58401 0.68 0.348827
Target:  5'- gGCGCCggcaggugaGCCAgugggcuguggugUCGGCGGCuuuGGCGAugCg -3'
miRNA:   3'- aUGUGG---------UGGU-------------GGCCGCCG---CCGCUugG- -5'
18057 5' -60.4 NC_004680.1 + 12359 0.68 0.382845
Target:  5'- cACACCAaCACCaGCGccuugGGCGGGCCa -3'
miRNA:   3'- aUGUGGUgGUGGcCGCcg---CCGCUUGG- -5'
18057 5' -60.4 NC_004680.1 + 12431 0.67 0.39147
Target:  5'- aGCACCAgacgcgggacuCC-CCGGCGcggcacccgaaGCGGCGGucGCCc -3'
miRNA:   3'- aUGUGGU-----------GGuGGCCGC-----------CGCCGCU--UGG- -5'
18057 5' -60.4 NC_004680.1 + 41647 0.73 0.179621
Target:  5'- gUACACCGauUCugCGGCGGCGaCGAagaaaGCCa -3'
miRNA:   3'- -AUGUGGU--GGugGCCGCCGCcGCU-----UGG- -5'
18057 5' -60.4 NC_004680.1 + 39534 0.68 0.365978
Target:  5'- -uUugCAUCGCCgGGCGGCuGCGggUg -3'
miRNA:   3'- auGugGUGGUGG-CCGCCGcCGCuuGg -5'
18057 5' -60.4 NC_004680.1 + 20145 0.68 0.371823
Target:  5'- cACACUGCgggugauuuguuguCGCCggaggaucaGGCGGCGGUGGAUCu -3'
miRNA:   3'- aUGUGGUG--------------GUGG---------CCGCCGCCGCUUGG- -5'
18057 5' -60.4 NC_004680.1 + 47840 0.7 0.262664
Target:  5'- aGCGCCG--GCUGGCuGCGGCGGuugGCCg -3'
miRNA:   3'- aUGUGGUggUGGCCGcCGCCGCU---UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.