Results 81 - 100 of 112 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18057 | 5' | -60.4 | NC_004680.1 | + | 43534 | 0.68 | 0.365978 |
Target: 5'- gACGCCGCCACguucgaccagGGCGGCcGgGAACg -3' miRNA: 3'- aUGUGGUGGUGg---------CCGCCGcCgCUUGg -5' |
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18057 | 5' | -60.4 | NC_004680.1 | + | 21773 | 0.66 | 0.445785 |
Target: 5'- -uCGCgGCCgaauaaguggGCUGGCauGGCGGUGAACUu -3' miRNA: 3'- auGUGgUGG----------UGGCCG--CCGCCGCUUGG- -5' |
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18057 | 5' | -60.4 | NC_004680.1 | + | 57318 | 0.66 | 0.445785 |
Target: 5'- --gACCGCgguaaggauccaCGCCGGC--CGGCGAACCu -3' miRNA: 3'- augUGGUG------------GUGGCCGccGCCGCUUGG- -5' |
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18057 | 5' | -60.4 | NC_004680.1 | + | 33502 | 0.66 | 0.455242 |
Target: 5'- cACACCGCguuCCaGGUGuGCGaCGAACCa -3' miRNA: 3'- aUGUGGUGgu-GG-CCGC-CGCcGCUUGG- -5' |
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18057 | 5' | -60.4 | NC_004680.1 | + | 10222 | 0.66 | 0.455242 |
Target: 5'- -uCGCCGCCACCGGCaaGGuCaGCauGGAUCa -3' miRNA: 3'- auGUGGUGGUGGCCG--CC-GcCG--CUUGG- -5' |
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18057 | 5' | -60.4 | NC_004680.1 | + | 34463 | 0.66 | 0.455242 |
Target: 5'- -uCGCCGCCGCgGuaGuCGGCGAugCu -3' miRNA: 3'- auGUGGUGGUGgCcgCcGCCGCUugG- -5' |
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18057 | 5' | -60.4 | NC_004680.1 | + | 25493 | 0.66 | 0.464806 |
Target: 5'- gACAUCAgaCACCGcGUGGCGGgGcucaaGGCCu -3' miRNA: 3'- aUGUGGUg-GUGGC-CGCCGCCgC-----UUGG- -5' |
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18057 | 5' | -60.4 | NC_004680.1 | + | 42724 | 0.66 | 0.464806 |
Target: 5'- uUGCGCCGCaaguuccCCGGUcGUGGCugGGACCg -3' miRNA: 3'- -AUGUGGUGgu-----GGCCGcCGCCG--CUUGG- -5' |
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18057 | 5' | -60.4 | NC_004680.1 | + | 41597 | 0.66 | 0.474473 |
Target: 5'- aGCACC-UCACCaaccaggggguGGUguaGGUGGCGAACUc -3' miRNA: 3'- aUGUGGuGGUGG-----------CCG---CCGCCGCUUGG- -5' |
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18057 | 5' | -60.4 | NC_004680.1 | + | 18441 | 0.67 | 0.436439 |
Target: 5'- ---uCCGCUAUCcGCGGCGGCGuGCa -3' miRNA: 3'- auguGGUGGUGGcCGCCGCCGCuUGg -5' |
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18057 | 5' | -60.4 | NC_004680.1 | + | 27694 | 0.67 | 0.436439 |
Target: 5'- aACGCgucaACCAUUgGGCGGCuGGCGGcaagACCg -3' miRNA: 3'- aUGUGg---UGGUGG-CCGCCG-CCGCU----UGG- -5' |
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18057 | 5' | -60.4 | NC_004680.1 | + | 12298 | 0.67 | 0.436439 |
Target: 5'- gUGC-CCAUCccgACCaguggGGCGGgGGCGAccGCCg -3' miRNA: 3'- -AUGuGGUGG---UGG-----CCGCCgCCGCU--UGG- -5' |
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18057 | 5' | -60.4 | NC_004680.1 | + | 20145 | 0.68 | 0.371823 |
Target: 5'- cACACUGCgggugauuuguuguCGCCggaggaucaGGCGGCGGUGGAUCu -3' miRNA: 3'- aUGUGGUG--------------GUGG---------CCGCCGCCGCUUGG- -5' |
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18057 | 5' | -60.4 | NC_004680.1 | + | 38225 | 0.67 | 0.40022 |
Target: 5'- aACGCCAgCCugCGGUGcCGGCuacaaGAACUa -3' miRNA: 3'- aUGUGGU-GGugGCCGCcGCCG-----CUUGG- -5' |
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18057 | 5' | -60.4 | NC_004680.1 | + | 749 | 0.67 | 0.40022 |
Target: 5'- gGCACCguuuggcugGCCGUCGGCGGUucGaGCGGGCUg -3' miRNA: 3'- aUGUGG---------UGGUGGCCGCCG--C-CGCUUGG- -5' |
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18057 | 5' | -60.4 | NC_004680.1 | + | 7344 | 0.67 | 0.409095 |
Target: 5'- aAC-CCGCUgacggagauACCGGuCGGCGGUGGugUu -3' miRNA: 3'- aUGuGGUGG---------UGGCC-GCCGCCGCUugG- -5' |
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18057 | 5' | -60.4 | NC_004680.1 | + | 886 | 0.67 | 0.409095 |
Target: 5'- gACGCUGCCGgcaauCCGGUGG-GGCGu-CCg -3' miRNA: 3'- aUGUGGUGGU-----GGCCGCCgCCGCuuGG- -5' |
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18057 | 5' | -60.4 | NC_004680.1 | + | 43041 | 0.67 | 0.418091 |
Target: 5'- aACGCCgACCACUGGUG-CaGGCucGCCg -3' miRNA: 3'- aUGUGG-UGGUGGCCGCcG-CCGcuUGG- -5' |
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18057 | 5' | -60.4 | NC_004680.1 | + | 56038 | 0.67 | 0.418091 |
Target: 5'- cGCACCAUCugCuaCuGCGGCGAcGCCg -3' miRNA: 3'- aUGUGGUGGugGccGcCGCCGCU-UGG- -5' |
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18057 | 5' | -60.4 | NC_004680.1 | + | 57845 | 0.67 | 0.427206 |
Target: 5'- -cUACCACCuauCCGGUGGUGGa-GGCg -3' miRNA: 3'- auGUGGUGGu--GGCCGCCGCCgcUUGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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