miRNA display CGI


Results 1 - 9 of 9 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18058 3' -51.1 NC_004680.1 + 3280 0.67 0.873796
Target:  5'- --aUCGGCAgcggaGUCUugGUcgCCGACGACa -3'
miRNA:   3'- ggaAGCCGU-----UAGAuaCGa-GGCUGCUG- -5'
18058 3' -51.1 NC_004680.1 + 4543 0.69 0.821588
Target:  5'- uCCguuaCGGCg--CUGUGUUCCGACGu- -3'
miRNA:   3'- -GGaa--GCCGuuaGAUACGAGGCUGCug -5'
18058 3' -51.1 NC_004680.1 + 3097 1.13 0.0018
Target:  5'- aCCUUCGGCAAUCUAUGCUCCGACGACu -3'
miRNA:   3'- -GGAAGCCGUUAGAUACGAGGCUGCUG- -5'
18058 3' -51.1 NC_004680.1 + 26037 0.72 0.641636
Target:  5'- gCCUcagcgCGGCGGUCUAcGCgcuaggggcgaUCCGAUGACc -3'
miRNA:   3'- -GGAa----GCCGUUAGAUaCG-----------AGGCUGCUG- -5'
18058 3' -51.1 NC_004680.1 + 25392 0.69 0.812105
Target:  5'- gCCggUUGGCGAUC-AUGCgUUCGAUGAUu -3'
miRNA:   3'- -GGa-AGCCGUUAGaUACG-AGGCUGCUG- -5'
18058 3' -51.1 NC_004680.1 + 14843 0.68 0.84788
Target:  5'- gCCgcaUGGCAAUCg--GCccuccagUCCGGCGACc -3'
miRNA:   3'- -GGaa-GCCGUUAGauaCG-------AGGCUGCUG- -5'
18058 3' -51.1 NC_004680.1 + 29049 0.67 0.881633
Target:  5'- aCCgaUUGGguGUCaGUGCugucagugUCCGGCGGCg -3'
miRNA:   3'- -GGa-AGCCguUAGaUACG--------AGGCUGCUG- -5'
18058 3' -51.1 NC_004680.1 + 42529 0.67 0.886961
Target:  5'- aCCacCGGCGacaucgccaaagaaGUCggAUGCUCCGACcGCa -3'
miRNA:   3'- -GGaaGCCGU--------------UAGa-UACGAGGCUGcUG- -5'
18058 3' -51.1 NC_004680.1 + 34465 0.66 0.928777
Target:  5'- gCCgccgCGGUAGUCg--GCgaugCUGACGAUc -3'
miRNA:   3'- -GGaa--GCCGUUAGauaCGa---GGCUGCUG- -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.