miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18059 3' -58.7 NC_004680.1 + 36258 0.66 0.554188
Target:  5'- -gCGCCaagacGGCUGCCgcgAGCgAGGGAUu -3'
miRNA:   3'- gaGCGG-----CCGGCGGaa-UCGgUCUCUAc -5'
18059 3' -58.7 NC_004680.1 + 51843 0.66 0.543663
Target:  5'- -gUGCUGcGCUGCCgcacacGCCAGAGGUc -3'
miRNA:   3'- gaGCGGC-CGGCGGaau---CGGUCUCUAc -5'
18059 3' -58.7 NC_004680.1 + 57408 0.66 0.533205
Target:  5'- uUCGCCGGCCGgcguggauCCUUaccgcGGUCAcggaacGGGAUGa -3'
miRNA:   3'- gAGCGGCCGGC--------GGAA-----UCGGU------CUCUAC- -5'
18059 3' -58.7 NC_004680.1 + 42079 0.66 0.533205
Target:  5'- gCUCGaaugaGuGCCGCCg-GGCgCAGAGGUGg -3'
miRNA:   3'- -GAGCgg---C-CGGCGGaaUCG-GUCUCUAC- -5'
18059 3' -58.7 NC_004680.1 + 52198 0.67 0.49216
Target:  5'- -gCGCCGGCaaGCCgacgAGCCAGgAGGc- -3'
miRNA:   3'- gaGCGGCCGg-CGGaa--UCGGUC-UCUac -5'
18059 3' -58.7 NC_004680.1 + 53896 0.67 0.491151
Target:  5'- uCUCGCCGGCguugucgCGCCUguaGGUguG-GGUGg -3'
miRNA:   3'- -GAGCGGCCG-------GCGGAa--UCGguCuCUAC- -5'
18059 3' -58.7 NC_004680.1 + 34462 0.67 0.462355
Target:  5'- uUCGCC-GCCGCggUAGUCGGcGAUGc -3'
miRNA:   3'- gAGCGGcCGGCGgaAUCGGUCuCUAC- -5'
18059 3' -58.7 NC_004680.1 + 8939 0.67 0.452632
Target:  5'- --gGUCGuGCUGCUgguGCCAGGGAUGu -3'
miRNA:   3'- gagCGGC-CGGCGGaauCGGUCUCUAC- -5'
18059 3' -58.7 NC_004680.1 + 47841 0.67 0.442066
Target:  5'- -gCGCCGGCUGgCUgcggcgguUGGCCGggucgcuGAGAUGa -3'
miRNA:   3'- gaGCGGCCGGCgGA--------AUCGGU-------CUCUAC- -5'
18059 3' -58.7 NC_004680.1 + 22087 0.68 0.433527
Target:  5'- gUgGCUGGCCGCCcccauccCCAGAGAa- -3'
miRNA:   3'- gAgCGGCCGGCGGaauc---GGUCUCUac -5'
18059 3' -58.7 NC_004680.1 + 44875 0.71 0.283506
Target:  5'- cCUCccCCGGCaucggcacaacaGCCUUGGCCAGAGuGUGg -3'
miRNA:   3'- -GAGc-GGCCGg-----------CGGAAUCGGUCUC-UAC- -5'
18059 3' -58.7 NC_004680.1 + 21210 0.72 0.239018
Target:  5'- aCUgGCCGguGCCGCCggAGCCGGuGGAUa -3'
miRNA:   3'- -GAgCGGC--CGGCGGaaUCGGUC-UCUAc -5'
18059 3' -58.7 NC_004680.1 + 42719 0.73 0.194311
Target:  5'- --gGCgGGCCGCCUgGGCCAGgacauguucagGGAUGg -3'
miRNA:   3'- gagCGgCCGGCGGAaUCGGUC-----------UCUAC- -5'
18059 3' -58.7 NC_004680.1 + 3525 1.08 0.000597
Target:  5'- aCUCGCCGGCCGCCUUAGCCAGAGAUGc -3'
miRNA:   3'- -GAGCGGCCGGCGGAAUCGGUCUCUAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.