miRNA display CGI


Results 1 - 5 of 5 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18059 5' -58.3 NC_004680.1 + 3782 0.66 0.583071
Target:  5'- --gUCaCCCAGCaGUCAC-CGGUgCAGGc -3'
miRNA:   3'- aagAGgGGGUCG-CAGUGuGCCA-GUCC- -5'
18059 5' -58.3 NC_004680.1 + 15843 0.66 0.583071
Target:  5'- aUgUCCCCCAGCGaccCGCcaaGGUCAa- -3'
miRNA:   3'- aAgAGGGGGUCGCa--GUGug-CCAGUcc -5'
18059 5' -58.3 NC_004680.1 + 27176 0.68 0.459928
Target:  5'- cUUCgUCCCauuugUCGGCGUa--GCGGUCAGGg -3'
miRNA:   3'- -AAG-AGGG-----GGUCGCAgugUGCCAGUCC- -5'
18059 5' -58.3 NC_004680.1 + 46984 0.68 0.440704
Target:  5'- -aCUCCCaCCAGCGg-AUAUGGUCAa- -3'
miRNA:   3'- aaGAGGG-GGUCGCagUGUGCCAGUcc -5'
18059 5' -58.3 NC_004680.1 + 3488 1.07 0.00081
Target:  5'- cUUCUCCCCCAGCGUCACACGGUCAGGc -3'
miRNA:   3'- -AAGAGGGGGUCGCAGUGUGCCAGUCC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.