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miRNA: 3'- -ACCC--GGCgAACCugU----------UGGCCA--CGGUG- -5'
miRNA: 3'- aCCCgGCGa-------ACCUGUUG--------GCCACGGUG- -5'
Results 21 - 22 of 22 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio#
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P value |
| Predicted miRNA align pattern | |||||||
| 18060 | 5' | -59.6 | NC_004680.1 | + | 2833 | 0.66 | 0.471546 |
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Target: 5'- gUGGGuuCCGgUUGGugAugcuguagugACCGGUucGCCGCc -3' miRNA: 3'- -ACCC--GGCgAACCugU----------UGGCCA--CGGUG- -5' |
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| 18060 | 5' | -59.6 | NC_004680.1 | + | 24868 | 0.66 | 0.452073 |
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Target: 5'- cGGG-CGCccccggagUGGAUAACacuaguggCGGUGCCGCc -3' miRNA: 3'- aCCCgGCGa-------ACCUGUUG--------GCCACGGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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