miRNA display CGI


Results 1 - 13 of 13 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18061 3' -61.7 NC_004680.1 + 11389 0.66 0.391775
Target:  5'- ---aGAGGACCGGCUCAagGCC-CGUa- -3'
miRNA:   3'- uacgCUCCUGGCCGGGU--UGGaGCGgu -5'
18061 3' -61.7 NC_004680.1 + 3290 0.66 0.386564
Target:  5'- aGUGUGAGGAUCGGUugucgauagcgaagaUCGGCCUggagGCCAu -3'
miRNA:   3'- -UACGCUCCUGGCCG---------------GGUUGGAg---CGGU- -5'
18061 3' -61.7 NC_004680.1 + 41331 0.66 0.383116
Target:  5'- -cGCcGGcaucAUCGGcCCCGGCCUCGCCGc -3'
miRNA:   3'- uaCGcUCc---UGGCC-GGGUUGGAGCGGU- -5'
18061 3' -61.7 NC_004680.1 + 27364 0.66 0.383116
Target:  5'- -gGCGAGGuucUCGGCggCAGCgUCGCCGc -3'
miRNA:   3'- uaCGCUCCu--GGCCGg-GUUGgAGCGGU- -5'
18061 3' -61.7 NC_004680.1 + 58467 0.67 0.349775
Target:  5'- -cGCcuacACCuGGCCCAGCCUCGUCGa -3'
miRNA:   3'- uaCGcuccUGG-CCGGGUUGGAGCGGU- -5'
18061 3' -61.7 NC_004680.1 + 21334 0.67 0.341769
Target:  5'- -gGCGuGGGACCgcgcgGGCUCAGCCcCGUCGg -3'
miRNA:   3'- uaCGC-UCCUGG-----CCGGGUUGGaGCGGU- -5'
18061 3' -61.7 NC_004680.1 + 55804 0.67 0.341769
Target:  5'- -cGCGAuGGCCGGuaaaacCCCAACCgccacaCGCCGa -3'
miRNA:   3'- uaCGCUcCUGGCC------GGGUUGGa-----GCGGU- -5'
18061 3' -61.7 NC_004680.1 + 54050 0.67 0.326157
Target:  5'- cUGCGAGGA-CGGCCgCGAguaCUaCGCCGu -3'
miRNA:   3'- uACGCUCCUgGCCGG-GUUg--GA-GCGGU- -5'
18061 3' -61.7 NC_004680.1 + 50168 0.68 0.303016
Target:  5'- -cGCGGucgcaccGGGCCGGUCCuACCggcugcUCGCCGa -3'
miRNA:   3'- uaCGCU-------CCUGGCCGGGuUGG------AGCGGU- -5'
18061 3' -61.7 NC_004680.1 + 16850 0.68 0.269054
Target:  5'- -gGCGuGuACCGGUUgAACCUCGCCc -3'
miRNA:   3'- uaCGCuCcUGGCCGGgUUGGAGCGGu -5'
18061 3' -61.7 NC_004680.1 + 42018 0.69 0.249816
Target:  5'- cUGCGGGuGACCGGUUCGaacACCUCaCCGc -3'
miRNA:   3'- uACGCUC-CUGGCCGGGU---UGGAGcGGU- -5'
18061 3' -61.7 NC_004680.1 + 50263 0.69 0.237631
Target:  5'- -gGCGAgcagccgguaGGACCGGCCCGgugcgaccgcgACCcgagaccccuUCGCCAc -3'
miRNA:   3'- uaCGCU----------CCUGGCCGGGU-----------UGG----------AGCGGU- -5'
18061 3' -61.7 NC_004680.1 + 4363 1.06 0.000412
Target:  5'- cAUGCGAGGACCGGCCCAACCUCGCCAu -3'
miRNA:   3'- -UACGCUCCUGGCCGGGUUGGAGCGGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.