miRNA display CGI


Results 1 - 8 of 8 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18062 3' -53.1 NC_004680.1 + 24041 0.66 0.848172
Target:  5'- uGC-CGGUCGAUGguucggugaCGUCGGCGAaGAu -3'
miRNA:   3'- -UGuGCCAGCUACa--------GUAGCUGCUcCUu -5'
18062 3' -53.1 NC_004680.1 + 21238 0.66 0.848172
Target:  5'- uAUugGGuUCGAugcagUGUCGUCGGCcGGGGc -3'
miRNA:   3'- -UGugCC-AGCU-----ACAGUAGCUGcUCCUu -5'
18062 3' -53.1 NC_004680.1 + 59200 0.67 0.782464
Target:  5'- uCGgGGUUGuAUGUgGUCGGCGuGGAGu -3'
miRNA:   3'- uGUgCCAGC-UACAgUAGCUGCuCCUU- -5'
18062 3' -53.1 NC_004680.1 + 27466 0.69 0.676103
Target:  5'- aGCACGGUCGGUGUCGacgcaaUCGACc----- -3'
miRNA:   3'- -UGUGCCAGCUACAGU------AGCUGcuccuu -5'
18062 3' -53.1 NC_004680.1 + 28337 0.7 0.642836
Target:  5'- gGCGCGGgCGGUGUCggCGuCGGGGc- -3'
miRNA:   3'- -UGUGCCaGCUACAGuaGCuGCUCCuu -5'
18062 3' -53.1 NC_004680.1 + 15102 0.71 0.543538
Target:  5'- -gAUGGUCGGUGUCAUCGuCGAaaccgcGGGu -3'
miRNA:   3'- ugUGCCAGCUACAGUAGCuGCU------CCUu -5'
18062 3' -53.1 NC_004680.1 + 37023 0.75 0.365584
Target:  5'- gGCGCGuUCGAgugCAUCGAUGAGGAAg -3'
miRNA:   3'- -UGUGCcAGCUacaGUAGCUGCUCCUU- -5'
18062 3' -53.1 NC_004680.1 + 5383 1.06 0.002912
Target:  5'- aACACGGUCGAUGUCAUCGACGAGGAAg -3'
miRNA:   3'- -UGUGCCAGCUACAGUAGCUGCUCCUU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.