miRNA display CGI


Results 1 - 20 of 22 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18064 3' -51.5 NC_004680.1 + 26842 0.66 0.901542
Target:  5'- gAugGUCAUCaGGgcaaugaCGGUGGCGAGUu-- -3'
miRNA:   3'- gUugCAGUAG-CC-------GCCAUCGUUCGuug -5'
18064 3' -51.5 NC_004680.1 + 33184 0.66 0.901542
Target:  5'- uCGACGUCG-CGGCGGaguuguuugaguuUGGCcauGGCggUg -3'
miRNA:   3'- -GUUGCAGUaGCCGCC-------------AUCGu--UCGuuG- -5'
18064 3' -51.5 NC_004680.1 + 22794 0.66 0.900129
Target:  5'- -cACGguucCggUGGCGGUGGCGuucagguaggaggcGGCGACg -3'
miRNA:   3'- guUGCa---GuaGCCGCCAUCGU--------------UCGUUG- -5'
18064 3' -51.5 NC_004680.1 + 48095 0.66 0.895096
Target:  5'- uGGCG-CGUgGGCGGaugucaugAGCGccGGCGACa -3'
miRNA:   3'- gUUGCaGUAgCCGCCa-------UCGU--UCGUUG- -5'
18064 3' -51.5 NC_004680.1 + 24620 0.66 0.87996
Target:  5'- gCGAgGUC-UCGGCGG-GGCugcGGUAACc -3'
miRNA:   3'- -GUUgCAGuAGCCGCCaUCGu--UCGUUG- -5'
18064 3' -51.5 NC_004680.1 + 39917 0.66 0.87996
Target:  5'- ---aGUCAUCGcaCGGUGGCGAG-AACu -3'
miRNA:   3'- guugCAGUAGCc-GCCAUCGUUCgUUG- -5'
18064 3' -51.5 NC_004680.1 + 57544 0.67 0.863742
Target:  5'- gAACaUCAgCGGUGGUuuGGguGGCGGCg -3'
miRNA:   3'- gUUGcAGUaGCCGCCA--UCguUCGUUG- -5'
18064 3' -51.5 NC_004680.1 + 37479 0.67 0.861219
Target:  5'- ----uUCAUCGGCGGUgagaaggacaucGGCGucauuucgguaaccGGCAACa -3'
miRNA:   3'- guugcAGUAGCCGCCA------------UCGU--------------UCGUUG- -5'
18064 3' -51.5 NC_004680.1 + 1247 0.67 0.855245
Target:  5'- -cACGUCGaCGGCuGGgcagccggGGCAGgGCAGCa -3'
miRNA:   3'- guUGCAGUaGCCG-CCa-------UCGUU-CGUUG- -5'
18064 3' -51.5 NC_004680.1 + 35896 0.67 0.828304
Target:  5'- aAGCGUCAcgUCGGCaacuGCAcGCAGCg -3'
miRNA:   3'- gUUGCAGU--AGCCGccauCGUuCGUUG- -5'
18064 3' -51.5 NC_004680.1 + 12187 0.68 0.816961
Target:  5'- cCGACGg---UGGCGGUAGCcgccccguccgcGGCAGCg -3'
miRNA:   3'- -GUUGCaguaGCCGCCAUCGu-----------UCGUUG- -5'
18064 3' -51.5 NC_004680.1 + 18579 0.68 0.789373
Target:  5'- aCAGCaUCGUCGGUGGgccUGGUAGGCc-- -3'
miRNA:   3'- -GUUGcAGUAGCCGCC---AUCGUUCGuug -5'
18064 3' -51.5 NC_004680.1 + 17198 0.69 0.767775
Target:  5'- gCAACGUgAUCGGaCGGUgccccgguguGGCGcaaucggAGCGGCu -3'
miRNA:   3'- -GUUGCAgUAGCC-GCCA----------UCGU-------UCGUUG- -5'
18064 3' -51.5 NC_004680.1 + 25710 0.69 0.758311
Target:  5'- gCGGCGUCGgcgaCGGCGGggaugccgagGGCGAGUgcuGCg -3'
miRNA:   3'- -GUUGCAGUa---GCCGCCa---------UCGUUCGu--UG- -5'
18064 3' -51.5 NC_004680.1 + 21317 0.69 0.758311
Target:  5'- aCggUGUUcgCGGUGGUGGCGuGgGACc -3'
miRNA:   3'- -GuuGCAGuaGCCGCCAUCGUuCgUUG- -5'
18064 3' -51.5 NC_004680.1 + 12538 0.7 0.711726
Target:  5'- cCGGCaGcCAUCGGgccgccgccaccacCGGUGGUggGCAGCg -3'
miRNA:   3'- -GUUG-CaGUAGCC--------------GCCAUCGuuCGUUG- -5'
18064 3' -51.5 NC_004680.1 + 763 0.7 0.69283
Target:  5'- ---gGcCGUCGGCGGUucgAGCGGGCuGGCg -3'
miRNA:   3'- guugCaGUAGCCGCCA---UCGUUCG-UUG- -5'
18064 3' -51.5 NC_004680.1 + 22628 0.7 0.670373
Target:  5'- uGGCGUUGcUGGCGGguccaAGCAGGUGACg -3'
miRNA:   3'- gUUGCAGUaGCCGCCa----UCGUUCGUUG- -5'
18064 3' -51.5 NC_004680.1 + 24526 0.71 0.613763
Target:  5'- gCAAcCGaUCAggaggCGGUGGUGGCGguGGCGGCg -3'
miRNA:   3'- -GUU-GC-AGUa----GCCGCCAUCGU--UCGUUG- -5'
18064 3' -51.5 NC_004680.1 + 46126 0.8 0.211552
Target:  5'- gGGCGUCGUCGGUGGUGGUGaauucggcGGUGACg -3'
miRNA:   3'- gUUGCAGUAGCCGCCAUCGU--------UCGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.