Results 21 - 37 of 37 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18066 | 3' | -55.4 | NC_004680.1 | + | 44213 | 0.67 | 0.639409 |
Target: 5'- aGCAgCGAgaagaGCGGCAGCCaguUCGCg -3' miRNA: 3'- aCGUgGCUg----UGCUGUCGGcuuAGCGa -5' |
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18066 | 3' | -55.4 | NC_004680.1 | + | 9669 | 0.67 | 0.639409 |
Target: 5'- -uCGCCGAuCGCGcggccaGCAGCCGAAcCGCc -3' miRNA: 3'- acGUGGCU-GUGC------UGUCGGCUUaGCGa -5' |
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18066 | 3' | -55.4 | NC_004680.1 | + | 58401 | 0.68 | 0.617497 |
Target: 5'- gGCGCCGGCAgGugAGCCaguggGCUg -3' miRNA: 3'- aCGUGGCUGUgCugUCGGcuuagCGA- -5' |
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18066 | 3' | -55.4 | NC_004680.1 | + | 54968 | 0.68 | 0.617497 |
Target: 5'- gGgGCCGGCACGAuCGGUggCGggUCGg- -3' miRNA: 3'- aCgUGGCUGUGCU-GUCG--GCuuAGCga -5' |
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18066 | 3' | -55.4 | NC_004680.1 | + | 25313 | 0.68 | 0.606555 |
Target: 5'- cGCGCCG-CugGugAcCCGAAcCGCUa -3' miRNA: 3'- aCGUGGCuGugCugUcGGCUUaGCGA- -5' |
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18066 | 3' | -55.4 | NC_004680.1 | + | 30743 | 0.69 | 0.552346 |
Target: 5'- aUGCGCa-GgGCGACGGCUGGcagGUCGCg -3' miRNA: 3'- -ACGUGgcUgUGCUGUCGGCU---UAGCGa -5' |
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18066 | 3' | -55.4 | NC_004680.1 | + | 47840 | 0.69 | 0.541661 |
Target: 5'- cGCACCGAUcCc---GCCGGAUCGCa -3' miRNA: 3'- aCGUGGCUGuGcuguCGGCUUAGCGa -5' |
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18066 | 3' | -55.4 | NC_004680.1 | + | 12690 | 0.69 | 0.541661 |
Target: 5'- gGcCAUCGAgUACGGCGGCCaGGUCGCc -3' miRNA: 3'- aC-GUGGCU-GUGCUGUCGGcUUAGCGa -5' |
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18066 | 3' | -55.4 | NC_004680.1 | + | 47580 | 0.69 | 0.529988 |
Target: 5'- gUGCGCCGcCuACGAuccgugguuuccuCAGCCGAAcCGCg -3' miRNA: 3'- -ACGUGGCuG-UGCU-------------GUCGGCUUaGCGa -5' |
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18066 | 3' | -55.4 | NC_004680.1 | + | 10531 | 0.7 | 0.486349 |
Target: 5'- cGCcCCGAuaCGCGACAGCgCGAaauucauguuguuaAUCGCg -3' miRNA: 3'- aCGuGGCU--GUGCUGUCG-GCU--------------UAGCGa -5' |
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18066 | 3' | -55.4 | NC_004680.1 | + | 46783 | 0.7 | 0.479239 |
Target: 5'- --aGCCGAUgaACGugAGCCGggUCGa- -3' miRNA: 3'- acgUGGCUG--UGCugUCGGCuuAGCga -5' |
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18066 | 3' | -55.4 | NC_004680.1 | + | 22781 | 0.71 | 0.449367 |
Target: 5'- cGCcCCGGgAgaaGGCGGCCGAGUCGUc -3' miRNA: 3'- aCGuGGCUgUg--CUGUCGGCUUAGCGa -5' |
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18066 | 3' | -55.4 | NC_004680.1 | + | 37878 | 0.71 | 0.430033 |
Target: 5'- gGuCACCGGCAUGACugccGCCGAGgaugCGUa -3' miRNA: 3'- aC-GUGGCUGUGCUGu---CGGCUUa---GCGa -5' |
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18066 | 3' | -55.4 | NC_004680.1 | + | 39027 | 0.72 | 0.38749 |
Target: 5'- cGCGCU-ACACGuggccgcacuccaaaGCAGCCGAGUCGUc -3' miRNA: 3'- aCGUGGcUGUGC---------------UGUCGGCUUAGCGa -5' |
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18066 | 3' | -55.4 | NC_004680.1 | + | 24232 | 0.72 | 0.383924 |
Target: 5'- gGCACCGGCACGGCGGgUG---UGCUg -3' miRNA: 3'- aCGUGGCUGUGCUGUCgGCuuaGCGA- -5' |
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18066 | 3' | -55.4 | NC_004680.1 | + | 47840 | 0.82 | 0.082473 |
Target: 5'- aGCGCCGGCuggcuGCGGCgguuGGCCGggUCGCUg -3' miRNA: 3'- aCGUGGCUG-----UGCUG----UCGGCuuAGCGA- -5' |
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18066 | 3' | -55.4 | NC_004680.1 | + | 7327 | 1.08 | 0.00118 |
Target: 5'- gUGCACCGACACGACAGCCGAAUCGCUg -3' miRNA: 3'- -ACGUGGCUGUGCUGUCGGCUUAGCGA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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