miRNA display CGI


Results 21 - 40 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18067 3' -53.9 NC_004680.1 + 32476 0.66 0.779086
Target:  5'- gCGACGACgGCCGCacgaaauggCGCgGACCaGUGUCc -3'
miRNA:   3'- -GUUGUUG-UGGUG---------GCGgCUGGcCAUAG- -5'
18067 3' -53.9 NC_004680.1 + 24983 0.66 0.779086
Target:  5'- gAACcgcCACCACCGCCGGCgGcaccgccacuaGUGUUa -3'
miRNA:   3'- gUUGuu-GUGGUGGCGGCUGgC-----------CAUAG- -5'
18067 3' -53.9 NC_004680.1 + 53018 0.67 0.768996
Target:  5'- aCGAgAAUGCCGCCGCuaugCGACUGGa--- -3'
miRNA:   3'- -GUUgUUGUGGUGGCG----GCUGGCCauag -5'
18067 3' -53.9 NC_004680.1 + 24213 0.67 0.76798
Target:  5'- gAugGGCACCACCcuucccggcaccgGCaCGGCgGGUGUg -3'
miRNA:   3'- gUugUUGUGGUGG-------------CG-GCUGgCCAUAg -5'
18067 3' -53.9 NC_004680.1 + 28315 0.67 0.758765
Target:  5'- cCAGCAGCACCAUUcCCGAUgGGcaaAUCc -3'
miRNA:   3'- -GUUGUUGUGGUGGcGGCUGgCCa--UAG- -5'
18067 3' -53.9 NC_004680.1 + 57450 0.67 0.752563
Target:  5'- -uACAACcgcgccgccacccaaACCACCGCUGAuguuCUGGUGUUc -3'
miRNA:   3'- guUGUUG---------------UGGUGGCGGCU----GGCCAUAG- -5'
18067 3' -53.9 NC_004680.1 + 29294 0.67 0.748403
Target:  5'- --uCGAUACCAUCGUCGgGCUGGUAc- -3'
miRNA:   3'- guuGUUGUGGUGGCGGC-UGGCCAUag -5'
18067 3' -53.9 NC_004680.1 + 19433 0.67 0.748403
Target:  5'- cCAcCAcCGCCACCGaCCGcaACCGG-GUCg -3'
miRNA:   3'- -GUuGUuGUGGUGGC-GGC--UGGCCaUAG- -5'
18067 3' -53.9 NC_004680.1 + 29165 0.67 0.748403
Target:  5'- uCAGCAgugACACCACUGCgGcgccGCCGGa--- -3'
miRNA:   3'- -GUUGU---UGUGGUGGCGgC----UGGCCauag -5'
18067 3' -53.9 NC_004680.1 + 18325 0.67 0.748403
Target:  5'- gGAUGACGCCGaggucaaGCaGACCGGUGUUa -3'
miRNA:   3'- gUUGUUGUGGUgg-----CGgCUGGCCAUAG- -5'
18067 3' -53.9 NC_004680.1 + 24622 0.67 0.74736
Target:  5'- uGGCGcCGCCACCGCCaccaccgccuccuGAUCGGUu-- -3'
miRNA:   3'- gUUGUuGUGGUGGCGG-------------CUGGCCAuag -5'
18067 3' -53.9 NC_004680.1 + 27277 0.67 0.737922
Target:  5'- gCGGCGACGCUGCCGCCGAgaaCCu----- -3'
miRNA:   3'- -GUUGUUGUGGUGGCGGCU---GGccauag -5'
18067 3' -53.9 NC_004680.1 + 6375 0.67 0.737922
Target:  5'- uCAGCGAUACCGCCugcgaugaaaCCGAacCCGGcGUCa -3'
miRNA:   3'- -GUUGUUGUGGUGGc---------GGCU--GGCCaUAG- -5'
18067 3' -53.9 NC_004680.1 + 20876 0.67 0.727333
Target:  5'- gGACAACGCCAUgGgCCugucACCGGaGUCg -3'
miRNA:   3'- gUUGUUGUGGUGgC-GGc---UGGCCaUAG- -5'
18067 3' -53.9 NC_004680.1 + 2859 0.67 0.727333
Target:  5'- uGACcGguUCGCCGCCG-CCGGUGg- -3'
miRNA:   3'- gUUGuUguGGUGGCGGCuGGCCAUag -5'
18067 3' -53.9 NC_004680.1 + 3324 0.67 0.727333
Target:  5'- uGugAGCACCcUCaGCCGACUGGU-UCg -3'
miRNA:   3'- gUugUUGUGGuGG-CGGCUGGCCAuAG- -5'
18067 3' -53.9 NC_004680.1 + 12689 0.67 0.727333
Target:  5'- --cCAGCGCCauGCCGCCGGCCu----- -3'
miRNA:   3'- guuGUUGUGG--UGGCGGCUGGccauag -5'
18067 3' -53.9 NC_004680.1 + 12470 0.68 0.716649
Target:  5'- aGACGACACCGgaGCCGGacCCGGc--- -3'
miRNA:   3'- gUUGUUGUGGUggCGGCU--GGCCauag -5'
18067 3' -53.9 NC_004680.1 + 25137 0.68 0.716649
Target:  5'- cCGAcCGGCcCCACCGCC-ACCGGg--- -3'
miRNA:   3'- -GUU-GUUGuGGUGGCGGcUGGCCauag -5'
18067 3' -53.9 NC_004680.1 + 27928 0.68 0.705881
Target:  5'- cCAGCGcgucCACCACCGuCCGGCCGc---- -3'
miRNA:   3'- -GUUGUu---GUGGUGGC-GGCUGGCcauag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.