Results 1 - 20 of 21 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18067 | 5' | -50.3 | NC_004680.1 | + | 40663 | 0.66 | 0.95973 |
Target: 5'- ---gUGGCGugGGGCUCUGcGCAcgUCGa -3' miRNA: 3'- cccaAUUGCugCUCGAGGU-CGUa-AGC- -5' |
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18067 | 5' | -50.3 | NC_004680.1 | + | 33676 | 0.66 | 0.936488 |
Target: 5'- gGGGUUGuCGACGuAGggCCAGCGc--- -3' miRNA: 3'- -CCCAAUuGCUGC-UCgaGGUCGUaagc -5' |
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18067 | 5' | -50.3 | NC_004680.1 | + | 25819 | 0.66 | 0.941701 |
Target: 5'- aGGGUUcAUGACgGGGUUCCAGUu---- -3' miRNA: 3'- -CCCAAuUGCUG-CUCGAGGUCGuaagc -5' |
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18067 | 5' | -50.3 | NC_004680.1 | + | 29066 | 0.66 | 0.946628 |
Target: 5'- cGGUUugGGCGaACGuGCgggCCGcGCGUUCGg -3' miRNA: 3'- cCCAA--UUGC-UGCuCGa--GGU-CGUAAGC- -5' |
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18067 | 5' | -50.3 | NC_004680.1 | + | 32716 | 0.66 | 0.955638 |
Target: 5'- gGGGUguACGGgGAGUaccagCCAGCAgaCGu -3' miRNA: 3'- -CCCAauUGCUgCUCGa----GGUCGUaaGC- -5' |
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18067 | 5' | -50.3 | NC_004680.1 | + | 36609 | 0.66 | 0.95973 |
Target: 5'- ----cAGCGACGAGCUugCgAGCGgugUCGg -3' miRNA: 3'- cccaaUUGCUGCUCGA--GgUCGUa--AGC- -5' |
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18067 | 5' | -50.3 | NC_004680.1 | + | 39392 | 0.66 | 0.955638 |
Target: 5'- uGGGUUGGCaGACGguaGGCaccgCUGGCGuUUCGg -3' miRNA: 3'- -CCCAAUUG-CUGC---UCGa---GGUCGU-AAGC- -5' |
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18067 | 5' | -50.3 | NC_004680.1 | + | 40478 | 0.66 | 0.943706 |
Target: 5'- cGGGcucugcgcacgucgUGGCGugGGGCUCUGcGCAcgUCGa -3' miRNA: 3'- -CCCa-------------AUUGCugCUCGAGGU-CGUa-AGC- -5' |
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18067 | 5' | -50.3 | NC_004680.1 | + | 1118 | 0.66 | 0.936488 |
Target: 5'- uGGUgcGCgGACGAcGUUUCAGCAUuUCGa -3' miRNA: 3'- cCCAauUG-CUGCU-CGAGGUCGUA-AGC- -5' |
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18067 | 5' | -50.3 | NC_004680.1 | + | 42286 | 0.67 | 0.91912 |
Target: 5'- cGGUgcgGugGugGcAGC-CCAGCuGUUCGg -3' miRNA: 3'- cCCAa--UugCugC-UCGaGGUCG-UAAGC- -5' |
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18067 | 5' | -50.3 | NC_004680.1 | + | 33326 | 0.67 | 0.91912 |
Target: 5'- cGGGUUGAUGugGuuguggauggcGGC-CCGGUAgUCGu -3' miRNA: 3'- -CCCAAUUGCugC-----------UCGaGGUCGUaAGC- -5' |
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18067 | 5' | -50.3 | NC_004680.1 | + | 22169 | 0.67 | 0.912754 |
Target: 5'- cGGGUUGucguucACGcCGAGC-CUGGgGUUCGa -3' miRNA: 3'- -CCCAAU------UGCuGCUCGaGGUCgUAAGC- -5' |
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18067 | 5' | -50.3 | NC_004680.1 | + | 9408 | 0.67 | 0.930988 |
Target: 5'- cGGUUGagGCGcACGAGUUgCAGCGUg-- -3' miRNA: 3'- cCCAAU--UGC-UGCUCGAgGUCGUAagc -5' |
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18067 | 5' | -50.3 | NC_004680.1 | + | 40525 | 0.67 | 0.931551 |
Target: 5'- uGGGgcucugcacgcgucgUGGCGugGGGCUCUGcGCAcgUCGu -3' miRNA: 3'- -CCCa--------------AUUGCugCUCGAGGU-CGUa-AGC- -5' |
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18067 | 5' | -50.3 | NC_004680.1 | + | 40573 | 0.67 | 0.931551 |
Target: 5'- uGGGgcucugcgcgcgucgUGGCGugGGGCUCUGcGCAcgUCGu -3' miRNA: 3'- -CCCa--------------AUUGCugCUCGAGGU-CGUa-AGC- -5' |
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18067 | 5' | -50.3 | NC_004680.1 | + | 1533 | 0.68 | 0.884454 |
Target: 5'- cGG-UGGCGuaaguCGGGCUCgcaGGCGUUCGa -3' miRNA: 3'- cCCaAUUGCu----GCUCGAGg--UCGUAAGC- -5' |
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18067 | 5' | -50.3 | NC_004680.1 | + | 59198 | 0.68 | 0.899164 |
Target: 5'- gGGGUUGuauguggucgGCGugGAGUucgCCGGUGUUgGg -3' miRNA: 3'- -CCCAAU----------UGCugCUCGa--GGUCGUAAgC- -5' |
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18067 | 5' | -50.3 | NC_004680.1 | + | 27042 | 0.7 | 0.795928 |
Target: 5'- aGGUUGGcCGGCGAGUucgcgcaacgagUCCAGCAaUCc -3' miRNA: 3'- cCCAAUU-GCUGCUCG------------AGGUCGUaAGc -5' |
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18067 | 5' | -50.3 | NC_004680.1 | + | 32603 | 0.71 | 0.744326 |
Target: 5'- -cGUUGGCGACuauGUgauUCCAGCGUUCGa -3' miRNA: 3'- ccCAAUUGCUGcu-CG---AGGUCGUAAGC- -5' |
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18067 | 5' | -50.3 | NC_004680.1 | + | 35338 | 0.72 | 0.667438 |
Target: 5'- cGGGUUcccacuGCaGugGAGCaUCgAGCAUUCGa -3' miRNA: 3'- -CCCAAu-----UG-CugCUCG-AGgUCGUAAGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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